Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120473.Seq
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    31   0.20 
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    27   2.5  

>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
 Frame = +2

Query: 305 KILSQAKNSYVGVILLGSKNTKNSVAEQAPGEFKHIELLSALQTPTWQMIRELPES--PS 478
           K L+  K   VG++     +TKN +AEQ    + +I +L  +QT  +  ++ + ++  PS
Sbjct: 43  KFLANRKTDVVGIVGYKCDDTKNDLAEQE--AYWNISVLYPIQTALFSKLQSVSQTLKPS 100

Query: 479 KS-KGDWMDALL 511
            + +GD + A++
Sbjct: 101 NTMQGDLISAIV 112


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 646 ADNLEVNVIGPNLYDEGNIKN 708
           A NL V  +GP L D GN+KN
Sbjct: 186 ATNLAVLALGPILIDTGNLKN 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,929
Number of Sequences: 5004
Number of extensions: 63542
Number of successful extensions: 133
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)