Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120473.Seq
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017...    33   0.37 
06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,504...    31   1.1  
08_01_0628 - 5460030-5462960                                           28   8.0  

>03_06_0742 +
           35900505-35900519,35901230-35901281,35901647-35901772,
           35902303-35902613,35902745-35902988,35903726-35903976,
           35904071-35904277,35904546-35904713,35904798-35905127,
           35905266-35905400
          Length = 612

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 323 KNSYVGVILLGSKNTKNSVAEQAPGEFKHIEL---LSALQTPTWQMIRELPESPSKSK 487
           ++  +GV+L G+K T N +A++  G +KH+ +   +  +   T   ++ LP   S  K
Sbjct: 10  RSDEIGVVLFGTKETSNELAKEL-GGYKHVVVARDIKVVDEETTNALQNLPRGTSPGK 66


>06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,
            5042649-5046148
          Length = 1437

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +1

Query: 613  DEIQQVLNGFKADNLEVNVIGPNLYDEGNIKNNDFEL 723
            DE ++VLN  K+ NLE++ +  +   +  ++N D+ L
Sbjct: 1078 DEAEKVLNSLKSSNLEISTLPYSTVLDAYLRNRDYSL 1114


>08_01_0628 - 5460030-5462960
          Length = 976

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +2

Query: 368 KNSVAEQAPGEFKHIELLSALQTPTWQMIRELPESPSKSK 487
           +++  E+ P +   ++ L  L T  W M+++LP S SK K
Sbjct: 647 RSTFIEELPKDLGKLQKLQTLDTK-WSMVQKLPSSLSKLK 685


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,193,007
Number of Sequences: 37544
Number of extensions: 347130
Number of successful extensions: 666
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)