Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120473.Seq
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    26   0.49 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    26   0.49 
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.1  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 598 TKYDHDEIQQVLNGFKADNLEVNVI---GPNLYDEGNIKNN 711
           TKYD+ +I  VLN  +  N  VN +   GP   D   +K N
Sbjct: 26  TKYDNVDIDVVLNTERLLNAYVNCLLDQGPCTPDAAELKRN 66


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 598 TKYDHDEIQQVLNGFKADNLEVNVI---GPNLYDEGNIKNN 711
           TKYD+ +I  VLN  +  N  VN +   GP   D   +K N
Sbjct: 26  TKYDNVDIDVVLNTERLLNAYVNCLLDQGPCTPDAAELKRN 66


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 631 LNGFKADNLEVNVIGPNL 684
           +N  K DN++VNV G N+
Sbjct: 174 INFDKYDNIQVNVSGDNV 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,026
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)