Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120473.Seq
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp...    29   2.9  
At5g17340.1 68418.m02031 expressed protein weak similarity to M3...    29   5.0  
At3g59270.1 68416.m06607 syntaxin-related family protein contain...    28   8.8  

>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / ubiquitin family protein
           similar to SP|Q15459 Splicing factor 3 subunit 1
           (Spliceosome associated protein 114) {Homo sapiens};
           contains Pfam profiles PF00240: Ubiquitin family,
           PF01805: Surp module
          Length = 785

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 607 DHDEIQQVLNGFKADNLEVNVIGPNLYDE 693
           D +E++ V  G +A NLE NV   N++DE
Sbjct: 357 DEEEVKLVAEGMRAANLEENVKIENVHDE 385


>At5g17340.1 68418.m02031 expressed protein weak similarity to M3.4
           protein [Brassica napus] GI:4574746
          Length = 160

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 803 FFDEIVKTHCRSKSSATP 750
           FFD +VK HC +K+ +TP
Sbjct: 137 FFDCVVKLHCSTKAKSTP 154


>At3g59270.1 68416.m06607 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At1g56610,
           At3g54160, At1g47920 (syntaxin SYP81), At5g41830,
           At3g44180,  At1g48390, At3g59270  [Arabidopsis thaliana]
          Length = 335

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -3

Query: 251 VFFIGICNVSSIIQNY 204
           VFFIGICNV S+  +Y
Sbjct: 160 VFFIGICNVRSLYLSY 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,327,453
Number of Sequences: 28952
Number of extensions: 307656
Number of successful extensions: 645
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)