Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120472.Seq
(873 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ181928-1|ABA19229.1| 540|Homo sapiens CARDIF protein. 33 1.8
DQ174270-1|AAZ80417.1| 540|Homo sapiens mitochondrial anti-vira... 33 1.8
DQ167126-1|ABA54890.1| 540|Homo sapiens virus-induced signaling... 33 1.8
BC044952-1|AAH44952.1| 540|Homo sapiens virus-induced signaling... 33 1.8
AL353194-3|CAI11041.1| 540|Homo sapiens novel protein protein. 33 1.8
AL109804-18|CAI18851.1| 540|Homo sapiens novel protein protein. 33 1.8
AB232371-1|BAE79738.1| 540|Homo sapiens Ips-1 protein. 33 1.8
AB097003-1|BAC77356.1| 540|Homo sapiens putative NFkB activatin... 33 1.8
AB033097-1|BAA86585.1| 542|Homo sapiens KIAA1271 protein protein. 33 1.8
BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 5.5
AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subu... 31 5.5
AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (D... 31 5.5
AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III larg... 31 5.5
BC016048-1|AAH16048.1| 317|Homo sapiens LRRC38 protein protein. 30 9.5
AL603749-2|CAH70436.1| 294|Homo sapiens leucine rich repeat con... 30 9.5
AL354712-1|CAI21926.1| 294|Homo sapiens leucine rich repeat con... 30 9.5
>DQ181928-1|ABA19229.1| 540|Homo sapiens CARDIF protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 774 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAN 872
TVALK+P P++ VP+ + S K +VP+N
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPSN 339
>DQ174270-1|AAZ80417.1| 540|Homo sapiens mitochondrial anti-viral
signaling protein protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 774 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAN 872
TVALK+P P++ VP+ + S K +VP+N
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPSN 339
>DQ167126-1|ABA54890.1| 540|Homo sapiens virus-induced signaling
adapter protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 774 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAN 872
TVALK+P P++ VP+ + S K +VP+N
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPSN 339
>BC044952-1|AAH44952.1| 540|Homo sapiens virus-induced signaling
adapter protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 774 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAN 872
TVALK+P P++ VP+ + S K +VP+N
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPSN 339
>AL353194-3|CAI11041.1| 540|Homo sapiens novel protein protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 774 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAN 872
TVALK+P P++ VP+ + S K +VP+N
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPSN 339
>AL109804-18|CAI18851.1| 540|Homo sapiens novel protein protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 774 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAN 872
TVALK+P P++ VP+ + S K +VP+N
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPSN 339
>AB232371-1|BAE79738.1| 540|Homo sapiens Ips-1 protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 774 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAN 872
TVALK+P P++ VP+ + S K +VP+N
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPSN 339
>AB097003-1|BAC77356.1| 540|Homo sapiens putative NFkB activating
protein protein.
Length = 540
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 774 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAN 872
TVALK+P P++ VP+ + S K +VP+N
Sbjct: 307 TVALKVPANPASVSTVPSKLPTSSKPPGAVPSN 339
>AB033097-1|BAA86585.1| 542|Homo sapiens KIAA1271 protein protein.
Length = 542
Score = 32.7 bits (71), Expect = 1.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 774 TVALKLPVAPSTTEYVPTSISGSKKRKNSVPAN 872
TVALK+P P++ VP+ + S K +VP+N
Sbjct: 309 TVALKVPANPASVSTVPSKLPTSSKPPGAVPSN 341
>BC041089-1|AAH41089.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide A, 155kDa protein.
Length = 1390
Score = 31.1 bits (67), Expect = 5.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 11 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 133
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AY091459-1|AAM12029.1| 374|Homo sapiens RNA polymerase III subunit
RPC155-A protein.
Length = 374
Score = 31.1 bits (67), Expect = 5.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 11 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 133
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AL512628-1|CAI16466.1| 1390|Homo sapiens polymerase (RNA) III (DNA
directed) (155kD) (RPC155) protein.
Length = 1390
Score = 31.1 bits (67), Expect = 5.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 11 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 133
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>AF021351-1|AAB86536.1| 1391|Homo sapiens RNA polymerase III largest
subunit protein.
Length = 1391
Score = 31.1 bits (67), Expect = 5.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Frame = +2
Query: 11 ITDKCSKRKVCLH---HKRIARLLGIKKIYHQEY---KRVVSKVYKN 133
I+DKC K+ +C H + G+ KI H++Y K+VV + N
Sbjct: 146 ISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSN 192
>BC016048-1|AAH16048.1| 317|Homo sapiens LRRC38 protein protein.
Length = 317
Score = 30.3 bits (65), Expect = 9.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 651 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 559
SL +S+ SF+ +F+L T +C+ + +G+A
Sbjct: 250 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 280
>AL603749-2|CAH70436.1| 294|Homo sapiens leucine rich repeat
containing 38 protein.
Length = 294
Score = 30.3 bits (65), Expect = 9.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 651 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 559
SL +S+ SF+ +F+L T +C+ + +G+A
Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257
>AL354712-1|CAI21926.1| 294|Homo sapiens leucine rich repeat
containing 38 protein.
Length = 294
Score = 30.3 bits (65), Expect = 9.5
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 651 SLSRISQLSFNSAKFALVSTAVCLFLLAGIA 559
SL +S+ SF+ +F+L T +C+ + +G+A
Sbjct: 227 SLRELSEASFSECRFSLSLTDLCIIIFSGVA 257
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,363,310
Number of Sequences: 237096
Number of extensions: 2626553
Number of successful extensions: 5395
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5395
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11104084400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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