Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120472.Seq
(873 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock tr... 31 1.4
AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock tr... 31 1.4
AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical ... 31 1.4
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical pr... 29 4.3
AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenase... 29 5.7
AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical... 28 7.6
AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical... 28 7.6
>AY559748-1|AAS72410.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 602 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 730
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AY559747-1|AAS72409.1| 671|Caenorhabditis elegans heat shock
transcription factor 1 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 602 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 730
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>AL033536-5|CAA22146.1| 671|Caenorhabditis elegans Hypothetical
protein Y53C10A.12 protein.
Length = 671
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 602 NANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDE 730
N+ K+ C++ + L E + F NN PL+S + DE
Sbjct: 308 NSEEGPYKDVCDLLESLQRETQEPFSRRFTNNEGPLISEVTDE 350
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 29.5 bits (63), Expect = 3.3
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Frame = +3
Query: 300 LNVMPVMQDERKMSKRKKKVINNNKYILFN--SWYTKIKQPEWPSSPAMWDLVKNTPELA 473
++++P M K S K++ +Y + ++ +K KQ E + P +WD VKN+
Sbjct: 1083 VSLLPAMTSATKKSNVKQRPFILTQYCELSKLAYKSKPKQVEVMALPLLWDSVKNSAPDV 1142
Query: 474 DFVFIFDHTEKMVKKWPTDRHRRLQATTQQFQRAKKDRLRCL 599
D + K + K ++ + L T + +K +L L
Sbjct: 1143 DNKKATQYLAKTLAKLIGEK-QLLDLATSELDPNRKKQLDAL 1183
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -2
Query: 431 ATRPLGLLD--LSVPTVKQNVFIVVNHLLLAFGHFAFVLHDRHY 306
A PLG+L VPT Q F+ N ++ HF V+ +R+Y
Sbjct: 72 AGTPLGILTEWFEVPTSFQTYFVFTNFFIVMVNHF-LVVENRYY 114
>Z50110-3|CAA90445.2| 459|Caenorhabditis elegans Hypothetical
protein F18H3.4 protein.
Length = 459
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 130 KSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQLL 258
K N+ EQ TE A+ +N+KLL L + ++ MDQ L
Sbjct: 121 KRNLSARDEQALVTEIDALKRNKKLLESLAEITSHRKGMDQEL 163
>AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenases,
short chain protein9 protein.
Length = 319
Score = 28.7 bits (61), Expect = 5.7
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 4/127 (3%)
Frame = +3
Query: 90 IIKNTSGSFQRFTKIKHGKHAGATIFYRNCGRVQK*KVVE*TGIELLQ----QIQHGPAI 257
I+ S R ++ G+ AGAT++ GR + + G+ L+ +I
Sbjct: 9 IVTGASRGIGRGIALQLGE-AGATVYIT--GRKPEESLNSKVGLSGLEATADEITKRGGK 65
Query: 258 AIVNFLEKKNINYILNVMPVMQDERKMSKRKKKVINNNKYILFNSWYTKIKQPEWPSSPA 437
I F++ +N+ + N V++ E + + ++ NN Y + + +P + + P
Sbjct: 66 GIARFVDHQNMEEVKNFFEVVEKEHQ---GQLDILVNNAYQGVTAISENMGKPFYETDPY 122
Query: 438 MWDLVKN 458
+WD + N
Sbjct: 123 VWDTINN 129
>AL132877-17|CAB60849.2| 269|Caenorhabditis elegans Hypothetical
protein Y105E8B.7 protein.
Length = 269
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -2
Query: 680 RLTSCKTPNKAYRAFRSSLLILPNLRW*APQSVFFCSLELLRCRLKTTMSIGR 522
RL C + Y+A LL LP+ + Q+ S +L RC T M IGR
Sbjct: 211 RLNECTDSHVIYKA-SEYLLTLPDTK--LSQTTLKLSFDLSRCDSTTLMDIGR 260
>AC024791-10|ABM74563.1| 1736|Caenorhabditis elegans Hypothetical
protein Y47G6A.17 protein.
Length = 1736
Score = 28.3 bits (60), Expect = 7.6
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 532 DIVVFKRQRSNSSEQKKTDCGAYQRKFGRIKRELRNAR*ALFGVLQLVKRDIQ 690
++ F+R NS E++ TD + R LRNA + L +K+ ++
Sbjct: 1345 ELSTFRRNNENSDERRMTDLRVELDRLRTTNRTLRNANEEMKNELSRLKQTVE 1397
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,505,725
Number of Sequences: 27780
Number of extensions: 455008
Number of successful extensions: 1340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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