Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120471.Seq
         (826 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    25   0.55 
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   3.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.1  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   6.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   6.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   6.8  

>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 298 QDERKMSKRKKKVINNNKYILF-NSWYTKIKQPEWPSSPAMWDLVKNTPE 444
           QDE K  K +  +    + + F NS YT +K   +      W+  +N P+
Sbjct: 114 QDEEKNIKYRNLLETTTRRLAFVNSAYTLVKAYGFDGLDLAWEFPENKPK 163


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 24  HHKRIARLLGIKKIYHQEYKR 86
           H    A+L  I++IYHQE ++
Sbjct: 144 HSDYRAKLAQIRQIYHQELEK 164


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +3

Query: 252  WKKEH*LYPQRNACH 296
            W K+H  +P+   CH
Sbjct: 2271 WNKDHCDWPENTECH 2285


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 504 PMTSSSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSE 638
           P  SS+  +N   P++    T    N+N A    S    DKL  E
Sbjct: 119 PDISSTRGNNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEE 163


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 504 PMTSSSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSE 638
           P  SS+  +N   P++    T    N+N A    S    DKL  E
Sbjct: 67  PDISSTRGNNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEE 111


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +3

Query: 504 PMTSSSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSE 638
           P  SS+  +N   P++    T    N+N A    S    DKL  E
Sbjct: 250 PDISSTRGNNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEE 294


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,384
Number of Sequences: 336
Number of extensions: 4604
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)