Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120471.Seq
         (826 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.09 |||S-adenosylmethionine transporter |Schizosaccharo...    28   1.4  
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar...    28   1.8  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   3.2  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.3  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   7.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   7.5  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.9  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   9.9  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    25   9.9  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.9  

>SPAC12B10.09 |||S-adenosylmethionine transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -2

Query: 537 LRCRLKTTMSSVGHFFTHLFSVIKNEHKICQFGRVFHQIPHGR 409
           ++CR+K  M      +  +FS +   +K+CQFGR+   I HG+
Sbjct: 20  VQCRIKEIMYWNICLYWDVFSKLIIYNKVCQFGRI--HIFHGK 60


>SPCC1672.02c |sap1||switch-activating protein
           Sap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 170 NEKLLNKLESSSYNKSNMDQLIAIVNFLEK 259
           N+++  +L+  +  + N+D L+A VNFL K
Sbjct: 143 NDEINERLKKLTEEQQNVDMLVAKVNFLSK 172


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +1

Query: 310  KMSKRKKKVINNNKYILFNS---WYTKIKQPEWPSSPAMWDLVKNTPELADFV 459
            K + +K  V+ N   IL NS   W   IK+P   S P   D   N  +L   +
Sbjct: 923  KSNSKKVTVLRNKLNILNNSLSKWKCLIKKPSDFSEPVSMDFTSNDEQLVQLL 975


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
 Frame = +3

Query: 492 KNGRPMTSSSSSDN-AAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEF--YSLLNET 662
           K G+ +TS+ + +    IP ++ ++ +V   A +A  K     R  L   F  +  ++  
Sbjct: 320 KLGKMITSNHAEEKLTTIPITEAKKESVSNTALIAR-KNIIRERKYLSRMFDIFEHIDSY 378

Query: 663 FNNNVAPLLSSIYDEVLTRDFLTKNMAK 746
           FN+ +  LL  +  E L   F+ KN+A+
Sbjct: 379 FNHEINMLLVDLLLEPLQVAFVYKNLAR 406



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +1

Query: 289  PVMQDERKMSKRKKKVINNNKYILFNSWYTK 381
            P++ + +K+S +  K++ +N Y   N W+ +
Sbjct: 1060 PILPNLQKLSTQYSKIVRDNDYGNVNCWFNR 1090


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -2

Query: 354 VFIVVNHLLLAFGHFAFVLHDRHYVEDIVNVLFSKKFTIAISWSM 220
           ++I +  L LA G FA++  DR+ V+     +FS  F  A+  S+
Sbjct: 102 IWITLLILALAVGGFAYIDVDRNLVQGAAMKIFSFTFQTALPISI 146


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 443 NWQILCSFLITLKRWVKKWPTDDIVVFKRQRSNS 544
           NWQ   S L+ +  W+  + T+  V+ ++ R  S
Sbjct: 108 NWQEFSSILVCVPAWIANYVTNAEVIGEKFRKES 141


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 62  NISSRIQAGRFKGLQKSNMVNMPEQQSSTETAAVCKNEKLLNKLESSSYNKSNMDQ 229
           ++SS+ +   F    ++    + EQ  S +     K  ++LN L    YN  N DQ
Sbjct: 579 SLSSKHEVDLFTAENEAAREKLVEQLCSLQAQRKQKINEILNLLSMGMYNTINTDQ 634


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 497 WPTDDIVVFKRQRSNSSEQKKTDCGAYQRKFGRIK 601
           WPT D      ++   SEQ +     Y R  G+++
Sbjct: 42  WPTYDAQTIPWKKKKKSEQHELWASVYNRTIGKLQ 76


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +2

Query: 497 WPTDDIVVFKRQRSNSSEQKKTDCGAYQRKFG 592
           WPT D+++    + N +    +DC      +G
Sbjct: 282 WPTKDLIIVVNSKGNLTYLNPSDCKVIDTIYG 313


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +3

Query: 510 TSSSSSDNAAIPASKKRQT---AVLTNANLAELKESCEMRDK 626
           ++++SS   A  A+K+  +   A LT++ + ELKE+  + DK
Sbjct: 18  SNTTSSQRVAAQAAKRASSGAFAQLTSSQIQELKEAFALLDK 59


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 316 SKRKKKVINNNKYILFN-SWYTKIKQPEWP-SSPAMWDLVKNTPEL 447
           S R++ V NNN   +FN S++ KI    +   +  +WD ++N  +L
Sbjct: 232 SLRERFVDNNNSDYIFNVSYHKKIPADGFSLYTREIWDTIENNKDL 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,468
Number of Sequences: 5004
Number of extensions: 75561
Number of successful extensions: 268
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)