Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120471.Seq
         (826 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0544 + 4306436-4306762                                           29   3.4  
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678     29   4.5  
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475           29   5.9  
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760...    29   5.9  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   7.8  

>11_01_0544 + 4306436-4306762
          Length = 108

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 625 LSRISQLSFNSAKFALVSTAVCLFLLAGIAALSLEDDDVIGRPFFYPSF 479
           L+  S+ S   A  A V   +CLFL+A  AA +  +  V   P + PS+
Sbjct: 5   LATRSRKSLAIAVAAAVPLLMCLFLVAAAAAAASSETAVASSPQYQPSY 53


>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
          Length = 261

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 325 KKKVINNNKYILFNSWYTKIKQPEWPSSPAMWDLVKNTPELADFV 459
           +   I+ N Y+   +W T+  QP    S   W L K +   A +V
Sbjct: 133 RSSTISENSYLCVATWDTRAPQPSQIESAVRWALRKRSQNKAVYV 177


>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
          Length = 634

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 474 H*KDG*KNGRPMTS---SSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYSEFY 644
           H  DG +N   MTS   SS+S +  IPA   +Q   +TN +L+    S E+ + L +  Y
Sbjct: 115 HFPDGLENCSSMTSLDLSSNSLSGPIPADISKQLPFITNLDLSYNSFSGEIPESLANCTY 174

Query: 645 SLLNETFNNNV 677
             +    NN +
Sbjct: 175 LNIVNLQNNKL 185


>11_02_0036 +
           7599646-7599950,7600106-7600145,7600403-7600437,
           7600789-7601189,7601281-7601361,7601451-7601536
          Length = 315

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 528 RLKTTMSSVGHFFTHLFSVIKNEHKICQFGRVFHQIP 418
           +++  +SS     TH F  +K E+ IC F R    IP
Sbjct: 185 KMERLVSSFCDAQTHSFDAMKKEYYICGFARSIESIP 221


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 373 YTKIKQPEWPSSPAMWDLVKNTPELADFVFI-FDHTEK 483
           + +  +PEWPSS A+     N PEL   V +  D T K
Sbjct: 169 HDQTNKPEWPSSVAVQHDQTNKPELPSSVAVQHDQTNK 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,342,220
Number of Sequences: 37544
Number of extensions: 466246
Number of successful extensions: 1224
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)