Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120471.Seq
         (826 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family prote...    32   0.40 
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide...    30   2.1  
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ...    29   3.7  
At5g36920.1 68418.m04425 expressed protein predicted protein, Ar...    29   5.0  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    28   6.5  
At4g02570.1 68417.m00351 cullin family protein similar to cullin...    28   6.5  
At3g48770.1 68416.m05326 hypothetical protein                          28   6.5  
At2g17860.1 68415.m02069 pathogenesis-related thaumatin family p...    28   6.5  
At5g59780.3 68418.m07494 myb family transcription factor (MYB59)...    28   8.7  
At5g59780.2 68418.m07493 myb family transcription factor (MYB59)...    28   8.7  
At5g59780.1 68418.m07492 myb family transcription factor (MYB59)...    28   8.7  
At5g44650.1 68418.m05471 expressed protein                             28   8.7  
At4g27850.1 68417.m03999 proline-rich family protein contains pr...    28   8.7  
At2g04080.1 68415.m00391 MATE efflux family protein similar to h...    28   8.7  

>At1g11090.1 68414.m01270 hydrolase, alpha/beta fold family protein
           similar to monoglyceride lipase from [Homo sapiens]
           GI:14594904, [Mus musculus] GI:2632162; contains Pfam
           profile PF00561: hydrolase, alpha/beta fold family
          Length = 324

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
 Frame = +2

Query: 401 LVARPCGIW*KTRPNWQILCSFLITLKRWVKKW---PTDDIVVFKRQRSNSSEQKK 559
           LVA  C I  K RP W +   FLI + R++  W   PT+D++    ++S   E+KK
Sbjct: 161 LVAPMCKISDKVRPKWPV-DQFLIMISRFLPTWAIVPTEDLL----EKSIKVEEKK 211


>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
           identical to like heterochromatin protein LHP1
           [Arabidopsis thaliana] GI:15625407; contains Pfam
           profile PF00385: 'chromo' (CHRromatin Organization
           MOdifier)
          Length = 445

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +1

Query: 382 IKQPEWPSSPAMWDLVKNTPELADFVFIFDHTEKMGKKMADR*HRRLQATTQQFQRAKKD 561
           IK   WP +   W+ ++N   +AD +  F+ + K GK    R  +R  A     Q  KK 
Sbjct: 127 IKWRGWPETANTWEPLENLQSIADVIDAFEGSLKPGK--PGRKRKRKYAGPHS-QMKKKQ 183

Query: 562 RL 567
           RL
Sbjct: 184 RL 185


>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
           GP:3172044:gnl:PID:d1029570:AB010080
          Length = 1332

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -2

Query: 507 SVGHFFTHLFSVIKNEHKICQF-GRVFHQIPHGRATRPLGLLDLSVPTVKQNVFIVVNHL 331
           +VG+ F   + +I++ H+IC       H   H    + L  L  S   ++ N F  +   
Sbjct: 509 AVGYLFEFFYPLIESGHRICSLDSGNKHNNSHVDTVKSLPFLSSSQQVLESNEFKPIGEA 568

Query: 330 LLAFGHFAFVLHDRHYVEDI 271
           ++  G       +  +V+DI
Sbjct: 569 VIKVGAALQASGEAVFVDDI 588


>At5g36920.1 68418.m04425 expressed protein predicted protein,
           Arabidopsis thaliana; expression supported by MPSS
          Length = 82

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 598 NSAKFALVSTAVCLFLLAGIAALSLEDDDVIGRPFFYPSFQC 473
           N++   L+S  +CL  + G+   S+ DDD+    +  PS  C
Sbjct: 5   NTSHVLLLSLLLCLMFVIGLVEASIPDDDMGPAIYTPPSGSC 46


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 144 EDCCSGMFTMFDFCKPLKRPACILDDIFF*CPTAWQFVCDEDT 16
           E CCSG F   D CKP +      +     CP A+ +  D+ T
Sbjct: 196 EYCCSGAFGTPDTCKPSEYSQFFKNA----CPRAYSYAYDDGT 234


>At4g02570.1 68417.m00351 cullin family protein similar to cullin 3
           [Homo sapiens] GI:3639052; contains Pfam profile
           PF00888: Cullin family
          Length = 738

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +3

Query: 543 PASKKRQTAVL--TNANLAELKESCEMRDKLYSEFYSLLNETFNNNVAPLLSSIYDEVLT 716
           PA    Q  +L  T  N+   K   +   +LY ++     E  N+ V P L   +DE + 
Sbjct: 32  PAFDSEQYMMLYTTIYNMCTQKPPHDYSQQLYDKYREAFEEYINSTVLPALREKHDEFML 91

Query: 717 RDFLTK 734
           R+   +
Sbjct: 92  RELFKR 97


>At3g48770.1 68416.m05326 hypothetical protein
          Length = 1899

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 621  DKLYSEFYSLL---NETFNNNVAPLLSSIYDEVLTRDFLTKNM 740
            +KL SE +S L   +   NNN   +LSSI D  +  D L K+M
Sbjct: 1634 EKLLSESFSRLPVHSPDCNNNDGVMLSSISDVFIADDLLLKDM 1676


>At2g17860.1 68415.m02069 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 253

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 144 EDCCSGMFTMFDFCKPLKRPACILDDIFF--*CPTAWQFVCDEDT 16
           E CC+G F   D C+P +        +FF   CPTA+ +  D+ T
Sbjct: 195 EFCCNGAFGTPDTCQPSEY------SVFFKKTCPTAYSYAYDDGT 233


>At5g59780.3 68418.m07494 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 235

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 501 RPMTSSSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYS--EFYSLLNETFNNN 674
           RPM+ +SSS N    +S    T+  T  +  ++ + CE  D  YS  + +  ++++  N 
Sbjct: 117 RPMSPTSSSSNCC-SSSMTTTTSQDTGGSNGKMNQECE--DGYYSMDDIWREIDQSGANV 173

Query: 675 VAPLLSSIYDE 707
           + P+  + Y E
Sbjct: 174 IKPVKDNYYSE 184


>At5g59780.2 68418.m07493 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 214

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 501 RPMTSSSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYS--EFYSLLNETFNNN 674
           RPM+ +SSS N    +S    T+  T  +  ++ + CE  D  YS  + +  ++++  N 
Sbjct: 96  RPMSPTSSSSNCC-SSSMTTTTSQDTGGSNGKMNQECE--DGYYSMDDIWREIDQSGANV 152

Query: 675 VAPLLSSIYDE 707
           + P+  + Y E
Sbjct: 153 IKPVKDNYYSE 163


>At5g59780.1 68418.m07492 myb family transcription factor (MYB59)
           contains PFAM profile: myb DNA binding domain PF00249
          Length = 170

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 501 RPMTSSSSSDNAAIPASKKRQTAVLTNANLAELKESCEMRDKLYS--EFYSLLNETFNNN 674
           RPM+ +SSS N    +S    T+  T  +  ++ + CE  D  YS  + +  ++++  N 
Sbjct: 52  RPMSPTSSSSNCC-SSSMTTTTSQDTGGSNGKMNQECE--DGYYSMDDIWREIDQSGANV 108

Query: 675 VAPLLSSIYDE 707
           + P+  + Y E
Sbjct: 109 IKPVKDNYYSE 119


>At5g44650.1 68418.m05471 expressed protein
          Length = 280

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 494 KWPTDDIVVFKRQRSNSSEQKKTDCG 571
           +WP  ++ V K+QR  S   K TD G
Sbjct: 190 RWPNLEVEVSKKQRGKSMYAKSTDTG 215


>At4g27850.1 68417.m03999 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 577

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 711 LTRDFLTKNMAKFKTVAPSCPLHRLLQNTCPLR 809
           L   FLT    K KT+ P+C L RL  N  PLR
Sbjct: 110 LLLSFLTGLWKKLKTLVPNC-LSRLSPNFLPLR 141


>At2g04080.1 68415.m00391 MATE efflux family protein similar to
           hypothetical protein GB:AAC27412; contains Pfam profile
           PF01554: Uncharacterized membrane protein family
          Length = 476

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 341 TTINTFCLTVGTLRSSSPSGLVA 409
           T++ + CLT+GTL    PSG+ A
Sbjct: 287 TSVLSICLTIGTLHYVIPSGVAA 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,563
Number of Sequences: 28952
Number of extensions: 385846
Number of successful extensions: 1119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)