Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120470.Seq
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    30   0.39 
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    28   1.2  
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    28   1.6  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.8  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   6.4  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
 Frame = +2

Query: 284 ECNV--KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 457
           +CN+  + ++S  +R    F    ++ +L C  S   T+  + + ++  C KCK  +R++
Sbjct: 179 KCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWR 238

Query: 458 LKYKTL*HVALRNGDFRLVYLSPAQILNLNL 550
               T+   +L   +      +  +I++L L
Sbjct: 239 EFLSTVFTTSLETDERDFESENRIEIIDLEL 269


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +2

Query: 503 FRLVYLSPAQILNLNLPLAYQKSVLFASNSAKVNERIKRLAR------DNNDDDDSYFYH 664
           F+ ++LSP+  L L L +AY  ++         NE++  L R       +ND+ D  F  
Sbjct: 546 FKYLHLSPSNRLQLWLKVAYCSALADLYELLMCNEKMSNLLRRVLKIMSSNDNIDELFL- 604

Query: 665 KQFIKINFL 691
           K+ + IN L
Sbjct: 605 KKCLNINLL 613


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 434 CKSGIRYKLKYKTL*HVALRNGDFRLVYLSPAQILNLNLPLAYQKSV 574
           C +G  + L       + LRNG     Y SPAQ+L  N+P  YQ ++
Sbjct: 137 CGNGKLHSLNLGDSGFLILRNGAIH--YASPAQVLQFNMP--YQLAI 179


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +2

Query: 278 NTECNVKAVDSACMRCRRSFAVYPAVTYLH---CGHS-CLCTDCDETVNVDN-TCPKCKS 442
           + E  V      CM C +      A+T  +   CGH+ C          V+N +CP CK 
Sbjct: 180 SAETTVPQECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKH 239

Query: 443 GIRYKLKYKTL 475
            IR+ L  +T+
Sbjct: 240 RIRFALPDQTM 250


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 460  QFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQI 359
            Q++SN +   RT ++ +   V+   +T+MSA Q+
Sbjct: 996  QYLSNMSHEIRTPLIGITGMVSFLLETQMSAEQL 1029


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,669
Number of Sequences: 5004
Number of extensions: 52732
Number of successful extensions: 139
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)