Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120470.Seq
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)                 33   0.32 
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)               31   0.96 
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   31   1.3  
SB_12983| Best HMM Match : Moricin (HMM E-Value=7)                     30   2.2  
SB_5860| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   2.8  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)                 29   3.9  
SB_37232| Best HMM Match : EGF (HMM E-Value=1)                         29   3.9  
SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               29   5.1  
SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.0  

>SB_48253| Best HMM Match : zf-C3HC4 (HMM E-Value=0.12)
          Length = 156

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 23/65 (35%), Positives = 31/65 (47%)
 Frame = +2

Query: 245 GNH*TDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNT 424
           GNH   R  P+   CN    +  C + R S      V   +CGHSC C+ C + VN    
Sbjct: 11  GNH---RLTPIG--CNFGGQE-ICDQYRTSKMKLVPVVMPNCGHSC-CSTCAKRVN--RK 61

Query: 425 CPKCK 439
           CP+C+
Sbjct: 62  CPECR 66


>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 353 VTYLHCGHSCLCTDCDETVNVDNTCPKCKSGI 448
           V  L+CGH C C  C + +   + CP C+  I
Sbjct: 548 VVLLNCGHVCSCRTCAQQI---HQCPVCRGDI 576


>SB_26290| Best HMM Match : zf-C2H2 (HMM E-Value=5.5e-08)
          Length = 317

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 299 AVDSACMRCRRSFAVYPAVTYLHCG-HSCLCTDCDETVNVDN 421
           A  + C  C+  F+    + Y   G H C+C +C+ET + +N
Sbjct: 225 ATKNKCASCQTEFSRSKDLKYHEKGCHPCVCNECNETFDHEN 266


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +2

Query: 323 CRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIR 451
           C+        + +L CGH   C  C E + +   CP C++ IR
Sbjct: 473 CKICMDAEVGIVFLPCGHLSCCPGCAEGMEL---CPMCRAPIR 512


>SB_12983| Best HMM Match : Moricin (HMM E-Value=7)
          Length = 150

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 605 ERIKRLARDNNDDDDSYFYHK 667
           E +K++ARD  D+  SYF+H+
Sbjct: 49  ETLKKVARDKEDEKSSYFHHQ 69


>SB_5860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 54

 Score = 25.4 bits (53), Expect(2) = 2.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +2

Query: 629 DNNDDDDSYFYH 664
           D++DDDD Y+YH
Sbjct: 36  DDDDDDDVYWYH 47



 Score = 23.0 bits (47), Expect(2) = 2.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 599 VNERIKRLARDNNDDDD 649
           ++E +  L  DN+DDDD
Sbjct: 7   ISETLLHLDNDNDDDDD 23


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 4   VRTLFVETKNYQR--NFDSNLPQ-PPRSTTCTTVALRRKRFEFWLARYLRC 147
           VRT+  E  NY++  +FD N+P   P +       +++  F  W   +L+C
Sbjct: 338 VRTMASEPSNYRKSADFDFNMPDTDPTAADAEWKKIQQNTFTRWCNEHLKC 388


>SB_48895| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 306 TVHACVAEEVSQFTPPLPICIADIRVCAPIATKR*TWTIRV 428
           +VH C A  V++FT  L +C+  +  CA +   R T  +R+
Sbjct: 411 SVHTCAALVVARFTLVLRLCL-PVHTCAALVFARFTLALRL 450


>SB_47201| Best HMM Match : SAM_1 (HMM E-Value=7.1e-09)
          Length = 765

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 362 LHCGHSCLCTDCDETVNVDNTCPKCKSGIR 451
           L C H+C+C  C     +++ CP C+  IR
Sbjct: 701 LPCRHACVCGSCFS--RLESKCPLCRQVIR 728


>SB_37232| Best HMM Match : EGF (HMM E-Value=1)
          Length = 79

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 368 CGHSCLCTDCDETVNVDNTCPKCKSGIRYKLK 463
           C +   C +  + VN   TCP C  G+R ++K
Sbjct: 3   CANGGTCNNGADNVNNTCTCPVCLKGVRCEMK 34


>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/82 (26%), Positives = 29/82 (35%)
 Frame = +1

Query: 79  TTCTTVALRRKRFEFWLARYLRCTTRPSIGTAARCSRCGATTDV*LTLRAFATKRWKSLD 258
           T C      R+RF      +L C   P     A    CG       TLR+  TK W ++ 
Sbjct: 121 TICNETKELRRRFNLTCGEFLLCAGVPIF--PAHNLNCGVNVT---TLRSLYTKSWSNVP 175

Query: 259 RQKLAAQHRMQCEGCRQCMHAL 324
            Q + A      E    C + L
Sbjct: 176 EQFIKAYSASFKETIVLCRYGL 197


>SB_3108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 631

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = +2

Query: 218 LCGHSQQ-NAGNH*TDRNLPLNTECNVKAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTD 394
           +C  + + +AGNH   +N     +CN       CM C   F+          G    CTD
Sbjct: 152 MCSETDECSAGNHTCGKN----AKCNNTIGSYHCM-CNPGFS----------GDGRECTD 196

Query: 395 CDETVNVDNTCPK 433
            DE V  D+TC K
Sbjct: 197 IDECVTGDHTCDK 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,926,036
Number of Sequences: 59808
Number of extensions: 451073
Number of successful extensions: 1564
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)