Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120469.Seq
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   1.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.0  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   9.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
 Frame = +3

Query: 273 LRTVLQSKIRQSSDLKRKLGITVWKEI--------TED-VNQGLKNVKESQVYQSIENRV 425
           L+ +++SK+  SSD+   L    W E+        T+D V     ++  SQ+  S++ ++
Sbjct: 295 LKNLIKSKLESSSDVNTPLIFDPWPELPTIYSAIHTKDYVRPSQNDISVSQI--SVDEKI 352

Query: 426 AALTNAVTETPIYQKTESVIKTTAEK 503
                ++ +  + Q T  VI+++ E+
Sbjct: 353 CTSYESLPKIQLEQNTAPVIESSFEQ 378


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
 Frame = +2

Query: 557  MRNSESFRSIEERVGSA-YENVKGKVASRSNSTQSFDEALRDAMAPPCPPFPSTSRCPER 733
            +RN+ SFR    ++GS   E+  G   S+ + +        D+++PP PPF + S    R
Sbjct: 1771 IRNAPSFRP---QMGSFDAEHAVGATFSQDDLSDPARSVDSDSVSPPLPPFVAGSNPNAR 1827

Query: 734  DTEL-----SLHTSQSFAIS 778
            +        +LHT  S +++
Sbjct: 1828 NNNNPYFYGNLHTESSLSLA 1847


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 641 SNSTQSFDEALRDAMAPPCPPFPSTSRCPERDTELSL 751
           +++  ++    R   +PP PP  S+S  P  D + SL
Sbjct: 403 TSNVPAYSTPARPTESPPPPPISSSSTTPRPDDKPSL 439


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 686 APPCPPFPSTSRCPERDTELS 748
           APP PP   +SR PER   LS
Sbjct: 229 APPIPPSIPSSRPPERVPSLS 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,343
Number of Sequences: 5004
Number of extensions: 59989
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)