Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120469.Seq
(785 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 31 1.0
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 30 1.8
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406... 29 3.2
05_01_0183 - 1289608-1289643,1289965-1290026,1290113-1290162,129... 29 3.2
06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092 29 4.2
06_03_0688 - 23525513-23525958,23527920-23529861,23529960-23530070 29 4.2
01_06_1499 + 37794215-37794317,37794426-37794643,37794735-377952... 29 4.2
07_03_1382 - 26170563-26170631,26171151-26171843 29 5.5
04_04_0289 + 24167246-24167411,24167584-24167708,24167744-241686... 29 5.5
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 28 7.3
03_06_0459 + 34085134-34086269,34086471-34086717 28 7.3
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 28 9.7
06_03_0649 + 23138442-23138842,23139576-23139849,23139929-231405... 28 9.7
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 647 STQSFDEALRDAMAPPCPPFPSTSRCPERDTELSLHTSQ 763
ST SF ++ PP PP P+TSR P R E L T +
Sbjct: 67 STSSFASSVMPQPPPPPPP-PATSRRPPRAPERELDTEE 104
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 30.3 bits (65), Expect = 1.8
Identities = 25/73 (34%), Positives = 34/73 (46%)
Frame = +2
Query: 344 ERDHRGRQSGFEKRQRKPSLSIDRESRGCSYKCRDRNTHIPKN*ICDKNDRREDVSIIGG 523
E RGR ++R R + S DR RG Y D N+ PK+ D RR + G
Sbjct: 341 EYSRRGRSDADDRRGRHYTPSDDR--RGRHYTPSDHNSAYPKHDSSDSRHRRPEYG-RGN 397
Query: 524 ITAGVSSKLGQMR 562
T+ + S+ GQ R
Sbjct: 398 STSELGSE-GQRR 409
>08_02_0903 +
22438406-22438614,22439640-22440366,22440494-22440679,
22441310-22441770,22441869-22442027,22442098-22442449,
22442563-22442842,22443330-22443661
Length = 901
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 677 DAMAPPCPPFPSTSR-CPERDTELSLHTSQSFAISL 781
DA+ PPC PFPS S CP T H F I L
Sbjct: 660 DAIRPPC-PFPSHSEDCPYSYTRQCNHDGPIFVIML 694
>05_01_0183 -
1289608-1289643,1289965-1290026,1290113-1290162,
1290260-1290357,1290547-1290927,1291191-1291697,
1291922-1291996,1292095-1292286,1292599-1292658
Length = 486
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 611 ENVKGKVASRSNSTQSFDEALRDAMAPPCPPFPSTSRCPERDTELSLHTSQSFAI 775
EN +G S+S+ T +D D PPCP P T+ + + H Q A+
Sbjct: 40 ENSEGSDGSKSSDTVEWDPW--DPPHPPCPTLPPTASLMSQVEMVKQHHFQVLAV 92
>06_03_0689 + 23538367-23538474,23538583-23540557,23540647-23541092
Length = 842
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 311 RALTDLALQYSSQSRDFIFTRASSRLHSARNWSACSGVRPANSSGVCMSP 162
R++ D + ++RDFI+ + S+ W GVRP + V + P
Sbjct: 527 RSIQDAYIHAIRRARDFIYIENQYFIGSSYGWRPGGGVRPEDVEAVNLIP 576
>06_03_0688 - 23525513-23525958,23527920-23529861,23529960-23530070
Length = 832
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -1
Query: 311 RALTDLALQYSSQSRDFIFTRASSRLHSARNWSACSGVRPANSSGVCMSP 162
R++ D + ++RDFI+ + S+ W GVRP + V + P
Sbjct: 517 RSIQDAYIHAIRRARDFIYIENQYFIGSSYGWRPDDGVRPEDVEAVNLIP 566
>01_06_1499 +
37794215-37794317,37794426-37794643,37794735-37795201,
37795273-37795363,37795376-37796062
Length = 521
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 735 SRSGQRLVLGNGGQGGAMASRSASSKL*VEFDLEATLP 622
S +R+V+G GG GG + A+ K V F + T+P
Sbjct: 303 STMDRRIVIGTGGGGGVLLVPPAALKSLVSFAVMVTIP 340
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +2
Query: 518 GGITAGVSSKLGQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQSFDEALRDAMAPPC 697
GG VSS+L + R + +E RVG + + G A + Q + PP
Sbjct: 128 GGGWPAVSSRLPRSRTGGGYSQVEGRVGEYWYHA-GMEAFFDDERQYEAAKAAAQLGPPP 186
Query: 698 PPFPSTS 718
PP P S
Sbjct: 187 PPPPQPS 193
>04_04_0289 +
24167246-24167411,24167584-24167708,24167744-24168694,
24168788-24168940,24169251-24169475,24170102-24170587
Length = 701
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -1
Query: 743 AQCPAQGSGLCSGMGGKVAPWRHAA--PRRSSESSS 642
A CP G+G+C VA WR A RR++ S S
Sbjct: 642 AACPTSGAGVCGAPTLVVALWRQQAVVVRRTARSGS 677
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 674 RDAMAPPCPPFPSTSRCPERDTELSLH 754
+ A APP PP P+ R P++ +S+H
Sbjct: 22 KPATAPPPPPPPTPPRPPQKPEPVSIH 48
>03_06_0459 + 34085134-34086269,34086471-34086717
Length = 460
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +2
Query: 662 DEALRDAMAPPCPPFPSTSRCPERDTELSLHTSQSFAIS 778
D A A+ PP PF S RC ER + +L S A+S
Sbjct: 58 DWATMRALPPPIAPFDSLERCAER-LDFALVGSNVVAVS 95
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/67 (31%), Positives = 31/67 (46%)
Frame = +2
Query: 527 TAGVSSKLGQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQSFDEALRDAMAPPCPPF 706
TAG S QM + S + E G+ +V G+ ++ ++ S L M P PF
Sbjct: 323 TAGSPSITVQMPTNPSLPTRPEVFGAIGASVPGQPSTILSAPPSL---LGRPMTPSASPF 379
Query: 707 PSTSRCP 727
P TS+ P
Sbjct: 380 PQTSQSP 386
>06_03_0649 +
23138442-23138842,23139576-23139849,23139929-23140562,
23140771-23140826,23141178-23141282,23141295-23141535,
23142686-23142690
Length = 571
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 324 KLGITVWKEITEDVNQGLKNVKESQVYQSIENRVAALTNAVTETPIYQKTESVIKTT 494
K G T WKE+T++ N+ N K + ++ + L +A++E Y T + + T+
Sbjct: 242 KKGDTFWKEVTDEFNK-KGNGKRRREINQLKVHWSRLKSAISEFNDYWSTVTQMHTS 297
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,542,951
Number of Sequences: 37544
Number of extensions: 432503
Number of successful extensions: 1958
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1949
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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