Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120469.Seq
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)                   57   2e-08
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        31   1.4  
SB_43608| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)                 30   2.4  
SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   3.2  
SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_33815| Best HMM Match : F5_F8_type_C (HMM E-Value=0.32)             29   5.6  
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  

>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
          Length = 829

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 29/84 (34%), Positives = 45/84 (53%)
 Frame = +3

Query: 255 EDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQSIENRVAAL 434
           E+EI TL+  L  K  Q +DLKR+LGIT W +I E +      V++S+ Y  +    +A 
Sbjct: 77  EEEITTLKQALARKENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNKLSQGASAT 136

Query: 435 TNAVTETPIYQKTESVIKTTAEKT 506
              + +    +KT S +KT +  T
Sbjct: 137 KVVLVDAS--EKTVSAVKTASSAT 158


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
 Frame = +3

Query: 231 MESRASPCEDEIATLRTVLQSKIRQSSDLKRKL--------GITVWKEITEDVNQGLKNV 386
           +++R    E+EI   +  L+   R+++DLK KL        G  V K++T  V +  +N+
Sbjct: 131 LKTRNRDLEEEITAKKAALKQISRENTDLKSKLELLMKDQSGAAVIKDLTRQVEELRENL 190

Query: 387 KESQVYQSIENR 422
           K  Q      NR
Sbjct: 191 KAKQAILEDINR 202


>SB_43608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 297 IRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQSIENRVAALTNAVTETPIYQKTE 476
           I ++ D+  +  +T+ KE+        K    ++   +I+  V   T  + ET +  KTE
Sbjct: 38  IIETGDIIERKEVTIKKEVIIKTEVIFKTEVTTKTEVTIKKEVIIETEVIIETEVTTKTE 97

Query: 477 SVIKT 491
            ++KT
Sbjct: 98  VIVKT 102



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +3

Query: 261 EIAT-LRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQSIENRVAALT 437
           E+ T    ++++++   +++  K  + +  E+  +     K     +    IE  V   T
Sbjct: 139 EVTTKTEVIIETEVTTKTEVIVKTEVIIETEVIIETEVTTKTEVIVKTEVIIETEVIIET 198

Query: 438 NAVTETPIYQKTESVIKT 491
              T+T +  KTE +IKT
Sbjct: 199 EVTTKTEVISKTEVIIKT 216


>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = +2

Query: 446 DRNTHIPKN*ICDKNDRREDVSI-IGGITAGVSSKLGQMR-NSESFRSIEERVGSAYENV 619
           ++  H  +  +C       + ++ IG  T  + S    +  N+++F S  + +GS  +N+
Sbjct: 179 EKPRHTRRESLCSSTSDIGNTNLDIGSNTLNIGSNTQNIESNTQNFGSNTQNIGSNTQNI 238

Query: 620 KGKVASRSNSTQSFDEALRDAMAPPCPPFPSTSRCPER 733
                +  ++TQ+    L  +  PP    P  +  PER
Sbjct: 239 GSNTQNIGSNTQTSVATLHTSARPPQTLLPQVT--PER 274


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +2

Query: 599  GSAYENVKGKVASRSNSTQSFDEALRDAMAPPCPPFPSTSRCPERDTELSLHTSQS 766
            GSA +  + +++S S+   S DEA   A  P  P   ST   PE  T ++  TS S
Sbjct: 1683 GSAMKKKRPRMSSCSSEPHSADEASSSASTPTTPKTVST--IPEEATSVTPSTSPS 1736


>SB_47268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -1

Query: 371 LIDVLGDLFPHRDAKFTF*VRALTDLALQYSSQSRDFIFTRASSRLHSARNWSACS 204
           L  VL ++FP  D + T   + + ++ L  SSQ++DF   +A S ++   +W  CS
Sbjct: 46  LFHVLKEIFP--DGEET---QCVPNIILDNSSQTKDFDEKKAGSNVNKLGSWVQCS 96


>SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)
          Length = 959

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
 Frame = +2

Query: 596 VGSAYENVKGKVASRSNSTQS---FDEALRDAMAPPCPPFPSTSRCPERDTEL 745
           VG  +   KG    R +  +    F+  LR + A P P   S SR PER T L
Sbjct: 1   VGLGWPKAKGVNPDRKSGVEPHCRFEGVLRPSPAAPAPSSTSKSRRPERRTAL 53


>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 594

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 2/84 (2%)
 Frame = +2

Query: 497 REDVSIIGGITAGVSSKLGQMRNSESFRSIEERVGSAYENVKGKVASRSNSTQSFDEALR 676
           +E+ +++ G T   ++K    R       +EE    +    K     R     S +  + 
Sbjct: 353 KENGNLLNGNTPAKNTKANPGRKLRFKTPLEESFDDSSSTEKRNEKLRQGRLGSTEPLIE 412

Query: 677 DAMAPPCPPFPSTS--RCPERDTE 742
           D +AP  PP P     + PE D E
Sbjct: 413 DLLAPCIPPRPGNGHLQIPEHDDE 436


>SB_23697| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 617 VKGKVASRSNSTQSFDEALRDAMAPPCPPFPSTSR 721
           V+    SRSNS+ S D   RD   PP  P P+T R
Sbjct: 213 VESDEESRSNSSSSVD---RDKETPPPSPLPATER 244


>SB_45304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 299 PSKLGLKT*TWHHGVERDHRGRQSGFEKRQRKPSLSIDRESRGCSYKCRDRNTHIP 466
           P K+G  T +W    +R +R ++    K+  K     D ES  C  KC   N   P
Sbjct: 55  PFKIGYCT-SWEWNTDRKYRDQRIAICKKFSKGKHECDSESGFCDTKCPFTNGSYP 109


>SB_33815| Best HMM Match : F5_F8_type_C (HMM E-Value=0.32)
          Length = 245

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 299 PSKLGLKT*TWHHGVERDHRGRQSGFEKRQRKPSLSIDRESRGCSYKCRDRNTHIP 466
           P K+G  T +W    +R +R ++    K+  K     D ES  C  KC   N   P
Sbjct: 55  PFKIGYCT-SWEWNTDRKYRDQRIAICKKFSKGKHECDSESGFCDTKCPFTNGSYP 109


>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1251

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +2

Query: 482 DKNDRREDVSIIGGITAGVSSKLGQMR--NSESFRSIEERVGSAYENVKGKVASRSNSTQ 655
           +KN+ ++         AG SS+L Q R  N ++   +E       E +KG + S+S+  +
Sbjct: 220 EKNEDKDMDVTFDESEAGSSSQLDQPRRGNEDTLGKVEVIDSGNDEAMKGSLVSQSDQPR 279

Query: 656 SFDEALRD 679
             DEA +D
Sbjct: 280 LEDEAKQD 287


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 297 IRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQSIENRVAALTNA 443
           I QS  LK+KL    WK +  D     K+    + +QS+ NRV ++T A
Sbjct: 339 ILQSYRLKKKLEHG-WKALVHDGVGKEKSSPRKRSFQSVVNRVRSMTEA 386


>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 425 GCSYKCRDRNTHIPKN*ICDKNDRREDVSIIGGITAGVSSKLGQMRNSES 574
           GC   CR R  +      C K    E+V++ GGI AG   KL ++ +  S
Sbjct: 116 GCYIVCRSR-ANCEYLEACKKTKIEENVTLRGGIGAGTFRKLAKVTSMAS 164


>SB_3515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +3

Query: 297 IRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQSIENRVAALTNAVTETPIYQKTE 476
           +RQ    KRK+ + V  E +E    G K      + +  +NR+   T A + TP    + 
Sbjct: 785 LRQDDTKKRKIFVNV--ESSEKKQTGGKRRNSIVIIKDNKNRIPPTTTAASSTPSSATST 842

Query: 477 SVIKTTAEKT 506
           S +   A  T
Sbjct: 843 SSLSLKATST 852


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,309,726
Number of Sequences: 59808
Number of extensions: 465489
Number of successful extensions: 1754
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)