Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120469.Seq
         (785 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific tran...    27   0.66 
AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger transc...    25   3.5  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   4.6  

>AY785361-1|AAV52865.1|  960|Anopheles gambiae male-specific
           transcription factor FRU-MA protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 0.66
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = -3

Query: 750 SDSSVSRSGQRLVLGNGGQGGAMAS 676
           S SS S S   L  GNGG GGA AS
Sbjct: 799 SSSSSSASSTSLCGGNGGGGGAGAS 823


>AF395080-1|AAK97462.1|  537|Anopheles gambiae zinc finger
           transcription factor pannier protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 335 HGVERDHRGRQSGFEKRQRKP 397
           HGV R    R+ G + R+RKP
Sbjct: 208 HGVNRPLAMRKDGIQTRKRKP 228


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 632  ASRSNSTQSFDEALRDAMAPPCPPFPSTSR 721
            A+ + + +   E   + ++PP PP P  SR
Sbjct: 1085 AAANEAAEPTGEVEEEEVSPPVPPIPPRSR 1114


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,311
Number of Sequences: 2352
Number of extensions: 15751
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)