Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120469.Seq
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      25   1.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   7.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +3

Query: 240 RASPCEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQSIEN 419
           ++S  E+E  T      +K +    ++RK G T ++EI     + + NV+E Q  QS+  
Sbjct: 219 KSSTIENESETESNASSTKTK----MRRKSGAT-FEEIQNQ--RVMANVRERQRTQSLNE 271

Query: 420 RVAALTNAVTETP 458
             AAL   +   P
Sbjct: 272 AFAALRKIIPTLP 284


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 453 FRSRHL*EQPRDSLSIDRL 397
           F  + L  QP D++S+DR+
Sbjct: 368 FAMKPLVRQPEDTMSVDRM 386


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 453 FRSRHL*EQPRDSLSIDRL 397
           F  + L  QP D++S+DR+
Sbjct: 368 FAMKPLVRQPEDTMSVDRM 386


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 682 HGATLPPIPEH 714
           HG  LPP+P H
Sbjct: 437 HGPPLPPLPLH 447


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 682 HGATLPPIPEH 714
           HG  LPP+P H
Sbjct: 437 HGPPLPPLPLH 447


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 692 PCPPFPSTSRCPERDTELSLHTSQSF 769
           P P +PSTS    +   +  +T Q F
Sbjct: 438 PSPQYPSTSSHILQQPSIRTYTQQQF 463


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 464 VYGCFGHGICK 432
           V+  +GHG+CK
Sbjct: 274 VHPLYGHGVCK 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,932
Number of Sequences: 438
Number of extensions: 3814
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)