Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120468.Seq
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    30   0.35 
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    30   0.35 
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    29   1.1  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.2  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    25   9.8  
SPAC824.06 |tim14||TIM23 translocase complex subunit Tim14|Schiz...    25   9.8  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   9.8  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 20/69 (28%), Positives = 37/69 (53%)
 Frame = -2

Query: 298 RQALAAIYSLSICIFPNSTTC*LGSYMCRLIFL*TTIVEFFKYPLTVIGKVLIIFR*HIN 119
           R  L  +++ S  + P+S TC L +  C+LIF  T++      P  ++ K +  F  +  
Sbjct: 573 RLRLLMVFASSFSLPPSSHTCALQAMYCQLIFSNTSV------PSAIVSKCVAFFW-NAA 625

Query: 118 KRQYNKNFV 92
           K+Q++K+ V
Sbjct: 626 KKQHSKSSV 634


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 183 NFSNILLPL*GRF**YLGNISIKDNIIKTLCVCVF 79
           N   I +PL GR    +G   + DN++ T+CVC F
Sbjct: 527 NLLEIFVPLTGR----IGTDKVADNVVATVCVCGF 557


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 659 DRLNNENTSTDYDTEDEERVNTFNSRKRRV 748
           D L N+ T  DYD+EDEE  N    +  +V
Sbjct: 376 DTLQNDFTIYDYDSEDEEYNNPSTQKTEKV 405


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +2

Query: 107 ILSFIDMLPKYYQNLPYNGKRIFEKFYDRSLQKYKSTHIATKLACCAVRKNTY 265
           +  FID L  Y   L      I  KFYD S +  +  +I  K+     R N Y
Sbjct: 361 VSKFIDKLESYESQLSLILVDIEAKFYDPSNEDIQFRYIFLKMVFWTARVNLY 413


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1028

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 221  YVSTYIFVNYDRRIFQISSYRYREGFDN 138
            Y+S Y F  +D       +YR  EGF+N
Sbjct: 991  YMSCYTFNYFDYACLMDHAYRLYEGFNN 1018


>SPAC824.06 |tim14||TIM23 translocase complex subunit
           Tim14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 435 AKKLFVEAFTKYHKMNGG 488
           A K+ V+AF KY  +NGG
Sbjct: 17  AGKIGVDAFRKYRNLNGG 34


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 285 LPFTVYQYVFFLTAQHASLVAICVDLYFCKL 193
           LPFT+Y+Y   LTA    L      ++FC +
Sbjct: 136 LPFTMYKYTVILTALEMPLA-----IFFCSI 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,056
Number of Sequences: 5004
Number of extensions: 50192
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)