Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120468.Seq
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0361 + 28733493-28733523,28733743-28733870,28733982-287340...    28   7.8  

>01_06_0361 +
           28733493-28733523,28733743-28733870,28733982-28734044,
           28735074-28735211,28735357-28735494,28735700-28735843,
           28736065-28736175,28736260-28736401,28736469-28736779,
           28737057-28737218,28737313-28737366,28737472-28737546,
           28737636-28737731
          Length = 530

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 553 CIYFNVLFFERFSSFCIAMSSSPPF 479
           C++F VLF  ++SS+ + +S  PP+
Sbjct: 58  CMHFLVLFPTKYSSYVVILSLLPPY 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,830,171
Number of Sequences: 37544
Number of extensions: 274505
Number of successful extensions: 569
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)