Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120468.Seq
         (821 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g43310.1 68418.m05293 COP1-interacting protein-related contai...    29   3.7  
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea...    28   6.5  
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica...    28   8.6  

>At5g43310.1 68418.m05293 COP1-interacting protein-related contains
           similarity to COP1-Interacting Protein 7 (CIP7)
           [Arabidopsis thaliana] GI:3327868
          Length = 1237

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = +2

Query: 662 RLNNENTSTDYDTEDEERVNTFNSRKR---RVVAKRALIRNSKK 784
           R ++ + S D ++ED+ER N  +SR+R   +VV +     NSKK
Sbjct: 417 RKHHSSCSEDSESEDQERDNEKSSRRRKSGKVVIRNINYINSKK 460


>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400); low
           similarity (47%) to Agamous-like MADS box protein AGL5
           (SP:P29385) {Arabidopsis thaliana}
          Length = 892

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +2

Query: 689 DYDTEDEERVNTFNSRKRRVVAKRALIRNSKKFLSAKWCRRR 814
           ++D E++ER+++  +RKRR  +   +  + K +     C ++
Sbjct: 164 EHDHEEDERISSLKARKRRKTSANNINLHEKNYTDRASCSKQ 205


>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to SP|P31244 DNA
           repair protein RAD16 {Saccharomyces cerevisiae};
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 638

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 707 EERVNTFNSRKRRVVAKRALIRNSKKFLSAKWCRR 811
           EER+ T + RKR +VA     +N +KF  +   RR
Sbjct: 569 EERILTLHERKRNIVASALGEKNWQKFCDSTNTRR 603


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,166,365
Number of Sequences: 28952
Number of extensions: 241998
Number of successful extensions: 559
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1882599200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)