Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120467.Seq
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   2.5  
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    27   2.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.7  
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo...    26   7.5  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   9.9  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 4/140 (2%)
 Frame = +3

Query: 27   QEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEVSQAAPTRYTQRLRNYKKHSRH 206
            + + N ++M + + L  H   ++ E  + I D  +Y  +S       TQ + +Y K    
Sbjct: 2204 RSIVNASNMKEEKMLKNH---HSREMSSFIIDEREYLRMSTFRSKMLTQSITHYLKCLSE 2260

Query: 207  HKPEHVLFACVARRIAFFDVTNARTHRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQID-- 380
                 VL +    R     ++N+        D+L N+   +LQNL  +   P + Q+   
Sbjct: 2261 SDENDVLIS----RCCTMWLSNSHL------DELNNSLQHYLQNLPCKKFIPVFYQLAAR 2310

Query: 381  --TEELRFRNSATCIIDETG 434
               E  +F+ S T I    G
Sbjct: 2311 LMNENSKFQQSLTSICYNVG 2330


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63  EQLIFHLIYNNEEAVNVICDNLKYTEVSQAAPTRYTQRLRNYK--KHSRHHKPEHVLFA 233
           E +++ +   NE     IC  + YTE+S+    + + RLR  +  KH    +  +VLF+
Sbjct: 91  ETVLYKVADPNENNKYPICSIISYTELSKLRENQ-SSRLREAEKSKHKNKTRTRYVLFS 148


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
 Frame = +3

Query: 315  NYSGFLQNLIRRAVAPEYLQIDT--EELRFRNSATCIIDETGLVASVPDGPELYNPIRSS 488
            NY   ++N IR  + P     D    +     S T ++ E  L    P  P+  NP   S
Sbjct: 1139 NYVTNIENNIRAKLLPSAANDDAWLSQNVVDESVTRVVKE--LPVPAPAAPQTLNPPSVS 1196

Query: 489  DIMKSQPIVCKLETF*NLKATHVS 560
             + +S+PI     T   +KAT  S
Sbjct: 1197 TVQQSKPIESNTHT-PEVKATSES 1219


>SPAC1F7.08 |fio1||iron transport multicopper oxidase
           Fio1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 622

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 426 ETGLVASVPDGPELYNPIRSSDIMKSQPIVCKLETF*N 539
           E+GL+A+  + PE+   I S D +K Q ++  + T  N
Sbjct: 488 ESGLLATFIEAPEMIPSISSPDFVKEQCMLDGVPTIGN 525


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +3

Query: 267 TNARTHRG-GVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSATCIIDETGLV 440
           T  RT +  G    L +N+  + Q+ I R   P+Y+  D + L  R   T I +ET L+
Sbjct: 174 TKLRTVQSCGTNLSLLDNFY-YYQDHIDRIFDPQYIPSDQDILHCRIKTTGISEETFLL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,620
Number of Sequences: 5004
Number of extensions: 65370
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)