Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120467.Seq
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794...    28   7.9  
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591...    28   7.9  
07_01_0618 + 4577417-4577430,4577838-4577874,4578070-4578173,457...    28   7.9  
06_01_0915 - 7054701-7055809,7056062-7056359                           28   7.9  

>07_03_1384 +
           26177053-26177227,26178754-26178823,26179427-26179469,
           26179888-26179965,26180010-26180027,26180103-26180187,
           26180273-26180355,26180489-26180546,26181258-26181368,
           26181769-26181826,26182005-26182101,26182585-26182620,
           26183107-26183137,26183993-26184046,26184159-26184301,
           26184411-26184560,26185084-26185317,26185450-26185509,
           26185974-26186204,26186829-26186981
          Length = 655

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 464 LGAVGHRRHQTRFVNYTRGAISKSQFLRV 378
           +G  GH +   +F+ +  G  +KS+F ++
Sbjct: 297 IGKSGHHKEMWKFIQFIEGTFTKSEFTKI 325


>07_01_0770 +
           5912412-5912476,5913759-5913779,5914015-5914638,
           5915264-5915439,5915526-5916124
          Length = 494

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 254 RNSSRDTREQNVFGFVVSRMLLVVA 180
           R  SRD R +N+FGF VS +L+ +A
Sbjct: 22  RFMSRDIRAKNIFGFSVSLILINLA 46


>07_01_0618 +
           4577417-4577430,4577838-4577874,4578070-4578173,
           4578512-4578707,4579559-4579628,4579849-4579952,
           4580296-4580335,4581016-4581070,4581418-4581426,
           4582026-4582157,4582544-4582613,4583029-4583086,
           4583173-4583228,4583315-4583470,4583589-4583700,
           4583782-4583923,4584141-4584216,4584306-4584401,
           4584509-4584637
          Length = 551

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 437 QTRFVNYTRGAISKSQFLRVDLQVLGR 357
           Q RF+NY    ++  QFL++  Q+ GR
Sbjct: 313 QKRFINYLVNQLAAHQFLKIACQIEGR 339


>06_01_0915 - 7054701-7055809,7056062-7056359
          Length = 468

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 282 HRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSA 410
           H   VGD L  N +  L  L+     PE +  D EE RFR  A
Sbjct: 177 HLAFVGDSLARNQAESLVCLLASRSTPELVHRDGEENRFRRWA 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,358,877
Number of Sequences: 37544
Number of extensions: 429287
Number of successful extensions: 1140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)