Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120467.Seq
         (827 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.49 
SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_19063| Best HMM Match : rve (HMM E-Value=3.6e-14)                   29   3.5  
SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_53674| Best HMM Match : rve (HMM E-Value=0.00095)                   29   6.1  
SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_34371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 644

 Score = 32.3 bits (70), Expect = 0.49
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 135 TEVSQAAPTRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFDVTNARTHR 287
           ++V +    R T+ L N +K+SR +KP   LF  +A+ I   +    R H+
Sbjct: 45  SKVPEPVTRRETRALANQRKNSREYKPRRQLFRRLAQSITSRNTKITRKHK 95


>SB_28511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = -3

Query: 393 SIPPCRFASTRALLR-VESNFAKIHCNC*IIDRQHHLDAFGRWSRRKTQFVARHTRTKRV 217
           +I P  +AS  AL R      AK+  NC +      +D FG         VA H +TK V
Sbjct: 251 TIDPAGWAS--ALTRGATKRGAKVFENCPVTGITTEVDDFGVLRVSGIDTVAGHIKTKNV 308

Query: 216 RVCGV*NASCSCVNAVYNALVPLVKLR--YILDCRI 115
             CG        V A+    VPLV +   YI+  RI
Sbjct: 309 VNCG--GCWAPAVGAMAGVKVPLVAMHHAYIVSERI 342


>SB_19063| Best HMM Match : rve (HMM E-Value=3.6e-14)
          Length = 467

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +3

Query: 138 EVSQAAPTRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFDVTNARTHRGGVGDQLFNN 317
           E+     T +T+  +  K+       E +   C+ RRI +  +  A +H GG  +++   
Sbjct: 257 EIHSDNGTNFTKADKELKQALEEWDLERINRFCIQRRIKWSFIPPAASHMGGAWERMVQT 316

Query: 318 YSGFLQNLIRRAVAPE--YLQIDTEELRFRNS 407
               L++L+   +  +   L +  E +   NS
Sbjct: 317 AKRVLKSLLNEQIVSDEVLLTVMAETVNIINS 348


>SB_3164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 623

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 23/79 (29%), Positives = 36/79 (45%)
 Frame = +3

Query: 111 VICDNLKYTEVSQAAPTRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFDVTNARTHRG 290
           VIC   +Y ++         ++   ++ H  H K EH L A   ++    D+T A T R 
Sbjct: 174 VICHLPRYLQLGGQGQVCTCEKGPGHESHRVHSKKEH-LKAGPHKKTKETDITEASTDRR 232

Query: 291 GVGDQLFNNYSGFLQNLIR 347
              DQ  ++  GFL+ L R
Sbjct: 233 KSIDQ--DDMQGFLEKLNR 249


>SB_53674| Best HMM Match : rve (HMM E-Value=0.00095)
          Length = 263

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
 Frame = +3

Query: 138 EVSQAAPTRYTQRLRNYKKHSRHHKPEHVLFACVARRIAFFDVTNARTHRGGVGDQLFNN 317
           E+     T +T+  +  K+       E +   C+ RRI +  +  A +H GG  +++   
Sbjct: 33  EIHSDNGTNFTKADKELKQALGEWDLERINRFCIQRRIKWSFIPPAASHMGGAWERMVQT 92

Query: 318 YSGFLQNLIRRAVAPE--YLQIDTEELRFRNS 407
               L++L+   +  +   L +  E +   NS
Sbjct: 93  TKRVLKSLLNEQIVSDEVLLTVMAETVNIINS 124


>SB_36385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +3

Query: 459  PELYNPIRSSDIMKSQPIVCKLETF*NLKATHVSWTERLADTKNTRRTFRCFWD 620
            P  +NPI +  I   +      +T  N ++  V W     DT   R +F   W+
Sbjct: 1157 PVQWNPINTDTIANRESYSINTDTIANRESFPVQWNPLNTDTIGNRESFPVQWN 1210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,162,829
Number of Sequences: 59808
Number of extensions: 504541
Number of successful extensions: 1219
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)