Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120467.Seq
         (827 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M57230-1|AAA59155.1|  918|Homo sapiens membrane glycoprotein 130...    31   6.7  
EF064722-1|ABK41905.1|  918|Homo sapiens interleukin 6 signal tr...    31   6.7  
BC117404-1|AAI17405.1|  918|Homo sapiens interleukin 6 signal tr...    31   6.7  
BC117402-1|AAI17403.1|  918|Homo sapiens interleukin 6 signal tr...    31   6.7  
AB102802-1|BAD89393.1|  857|Homo sapiens IL6ST nirs variant 4 pr...    31   6.7  

>M57230-1|AAA59155.1|  918|Homo sapiens membrane glycoprotein 130
           protein.
          Length = 918

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 45  NSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEVSQAAPTRYTQRLRNYKKHSRHHKPE 218
           N  ++   + +  I  NE AVNV   + +YT  S  + T Y  R+  Y        PE
Sbjct: 548 NGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE 605


>EF064722-1|ABK41905.1|  918|Homo sapiens interleukin 6 signal
           transducer (gp130, oncostatin M receptor) protein.
          Length = 918

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 45  NSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEVSQAAPTRYTQRLRNYKKHSRHHKPE 218
           N  ++   + +  I  NE AVNV   + +YT  S  + T Y  R+  Y        PE
Sbjct: 548 NGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE 605


>BC117404-1|AAI17405.1|  918|Homo sapiens interleukin 6 signal
           transducer (gp130, oncostatin M receptor) protein.
          Length = 918

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 45  NSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEVSQAAPTRYTQRLRNYKKHSRHHKPE 218
           N  ++   + +  I  NE AVNV   + +YT  S  + T Y  R+  Y        PE
Sbjct: 548 NGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE 605


>BC117402-1|AAI17403.1|  918|Homo sapiens interleukin 6 signal
           transducer (gp130, oncostatin M receptor) protein.
          Length = 918

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 45  NSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEVSQAAPTRYTQRLRNYKKHSRHHKPE 218
           N  ++   + +  I  NE AVNV   + +YT  S  + T Y  R+  Y        PE
Sbjct: 548 NGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE 605


>AB102802-1|BAD89393.1|  857|Homo sapiens IL6ST nirs variant 4
           protein.
          Length = 857

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = +3

Query: 45  NSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEVSQAAPTRYTQRLRNYKKHSRHHKPE 218
           N  ++   + +  I  NE AVNV   + +YT  S  + T Y  R+  Y        PE
Sbjct: 487 NGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE 544


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,908,843
Number of Sequences: 237096
Number of extensions: 2243227
Number of successful extensions: 8116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8116
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)