Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120467.Seq
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical pr...    28   9.4  
U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily ass...    28   9.4  

>U39645-9|AAM51511.1|  297|Caenorhabditis elegans Hypothetical
           protein C14F11.1b protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 363 EYLQIDTEELRFRNSATCIIDETGLVASVPDGPE 464
           ++  +D ++ R+ + +TC  DETG +A +   PE
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187


>U39645-8|AAA80361.1|  414|Caenorhabditis elegans Hypothetical
           protein C14F11.1a protein.
          Length = 414

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 363 EYLQIDTEELRFRNSATCIIDETGLVASVPDGPE 464
           ++  +D ++ R+ + +TC  DETG +A +   PE
Sbjct: 154 KFAGVDVKQYRYYDKSTCGFDETGALADIAQIPE 187


>AF016685-1|AAG24144.2|  300|Caenorhabditis elegans Hypothetical
           protein F59E11.8 protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  EEAVNVICDNLKYTEVSQAAPTRYTQRLRNYKKHSRHHK 212
           E  +N++ DNL    V Q   TRY+ RL    K S+ +K
Sbjct: 227 ERLLNILADNLHEYYVEQKDATRYSYRLTKILKISQQYK 265


>Z75542-4|CAA99861.1|  424|Caenorhabditis elegans Hypothetical
           protein F55D12.4 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 222 VLFACVARRIAFFDVTNARTHRGGVGDQLFNNYSGFLQNLIR--RAVAPEYLQIDTEELR 395
           +LF+C  R I +F+V +     G + D+      G ++ ++   ++   EY +++    R
Sbjct: 306 LLFSCGYRNIHYFEVASVILIIGLISDEEALEEKGKIEEIVEKLKSAVDEYCKMNKRSER 365

Query: 396 FRNSATCI 419
           +     C+
Sbjct: 366 YHQICECL 373


>U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 174 protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 180 RNYKKHSRHHKPEHVLFA 233
           +++KKH  H +PEHV +A
Sbjct: 72  KDHKKHMSHERPEHVEYA 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,590,756
Number of Sequences: 27780
Number of extensions: 383355
Number of successful extensions: 1087
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)