Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120467.Seq
         (827 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g58025.1 68414.m06576 DNA-binding bromodomain-containing prot...    31   0.93 
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    30   2.2  
At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putativ...    29   3.8  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    29   3.8  
At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR) domai...    29   5.0  
At1g73570.1 68414.m08517 suppressor of lin-12-like protein-relat...    29   5.0  
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar...    28   6.6  

>At1g58025.1 68414.m06576 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487; contains
           prenyl group binding site (CAAX box) Prosite:PS00294
          Length = 769

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 132 YTEVSQAAPT----RYTQRLRNYKKHSRHHKPEHVLFACVARR 248
           YTE S A  T    + + + +++K+H RHHK + +   CV +R
Sbjct: 320 YTEQSAAENTEDGGKASTKQKSHKRHGRHHKSDCMCAICVLKR 362


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 57  QAEQLIFHLIYNNEE-AVNVICDNLKYTEVSQAAPTRYTQRLRNYKKHS 200
           + + L F L+YNN E ++++IC +   TEV  AA     ++ RN +  S
Sbjct: 82  EKDHLSFSLLYNNRERSLDLICKDKAETEVWFAALKFLIEKSRNRRARS 130


>At4g39370.2 68417.m05572 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 361

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 18  TNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 119
           T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 154 TDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 18  TNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVIC 119
           T+Y + FNL S   A + + HLI + +E + V+C
Sbjct: 154 TDYAKNFNLTSQQDAAEALLHLISSLQEEI-VVC 186


>At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 546

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = +3

Query: 297 GDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSATCI--IDETGLVASV 449
           GDQL NN+ G+L + +RR+    +  ID +E R  +  T    I+++G+   V
Sbjct: 339 GDQLRNNFVGYLVDALRRSEINVF--IDNQEQRGEDLNTLFKRIEDSGIAIVV 389


>At1g73570.1 68414.m08517 suppressor of lin-12-like protein-related
           / sel-1 protein-related similar to Sel-1 homolog
           precursor (Suppressor of lin-12-like protein)
           (Sel-1L)(SP:Q9UBV2) {Homo sapiens}
          Length = 604

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 296 NTTSMRSGVGHVEKRNSSRDTREQNVFGFV 207
           NTT M   V  ++   SS D   Q+V GFV
Sbjct: 105 NTTLMEEAVSEIDSSASSGDPHAQSVMGFV 134


>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
           RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF00397:
           WW domain
          Length = 1088

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/46 (39%), Positives = 23/46 (50%)
 Frame = +3

Query: 372 QIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQP 509
           QI  E LRF  S+   I  T L    P GP+L    R +DI+ + P
Sbjct: 522 QIQDEALRFGRSSR--ISCTCLYGGAPKGPQLKELERGADIVVATP 565


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,077,821
Number of Sequences: 28952
Number of extensions: 336422
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)