Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120466.Seq
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)                     29   4.4  

>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
          Length = 1031

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = +3

Query: 66   KLQTQRMFKNLTHRS*IDEKL--TLSLEDLNTNKKKKKFGNAVCTKTRKPFRSITVTKCT 239
            K   ++  KNL     ++ K   T    +LN N KK+K   A C    K    +T    T
Sbjct: 875  KFSPEKRHKNLKGNEKVEAKNEHTQKENELNKNNKKEKTNAAECVDDNKKENRVTQPSVT 934

Query: 240  NY 245
            N+
Sbjct: 935  NH 936


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,755,888
Number of Sequences: 59808
Number of extensions: 289151
Number of successful extensions: 539
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)