Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120466.Seq
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AC084197-20|AAG23472.1|  270|Caenorhabditis elegans Hypothetical...    30   1.7  
U58753-4|AAC24435.2|  312|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U46668-3|AAA93346.1|  205|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = -2

Query: 444 YFNNSD*KVGQLIEFLF**SLPTTAKTRLLYYANYTFQNIFIFTRSLHYKTDIPTINTSN 265
           +F +S+  +G L++FL    L TT     L Y     QN+ +   ++ +K  +  I T N
Sbjct: 253 FFIHSESTIGVLVDFLIISDLVTTPLIIQLSYLGCNKQNLTVLMSAIKFKAFVKGIFTRN 312

Query: 264 I 262
           I
Sbjct: 313 I 313


>AC084197-20|AAG23472.1|  270|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.16 protein.
          Length = 270

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 114 IDEKLTLSLEDLNTNKKKKKFGNAVCTKTRKPFRSITVTKCTNYNR 251
           ID  L  +L +L+T  K +KF    C K   P R + V   T Y R
Sbjct: 136 IDASLMENLANLDTLPKPEKFFRIKCKKPDVPSRPLKVKFATEYQR 181


>U58753-4|AAC24435.2|  312|Caenorhabditis elegans Hypothetical
           protein W03B1.7 protein.
          Length = 312

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -3

Query: 479 SLCLKVQFHFGIILIILIKKWV 414
           SL +++QF+F + LI LI KW+
Sbjct: 113 SLSVEIQFYFLVPLIFLISKWI 134


>Z68214-1|CAA92444.1|  846|Caenorhabditis elegans Hypothetical
           protein C10C5.1 protein.
          Length = 846

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 587 TRFLPS*Y*VIFFCVWYIRFCFMYNLYTLFF*VSFSEGLTYLFLT 721
           T F P+ Y ++FF +W +   ++   + L+  ++++  LT  F T
Sbjct: 693 TCFAPNFYNILFFALWALNLIYLKFSFRLYRGLAYAFWLTLTFYT 737


>U46668-3|AAA93346.1|  205|Caenorhabditis elegans Hypothetical
           protein F38E9.4 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +3

Query: 114 IDEKLTLSLEDLNTNKKKKKFGNAVCTKTRKPFRSITVTKCTNYNR 251
           ID  L  +L  L+T  K ++F    C K   P R + V   T Y R
Sbjct: 136 IDASLMENLAKLDTLPKPEQFFRIKCKKPDVPSRPLKVKFATEYQR 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,915,186
Number of Sequences: 27780
Number of extensions: 241668
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)