Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120466.Seq
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.83 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 201 RKPFRSITVTKCTNYNRV 254
           RKPFR I   +C+N N +
Sbjct: 435 RKPFREILYFRCSNLNHM 452


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 351 YANYTFQNIFIFTRSLHYKTDIPTINTSNIPT*LCC 244
           Y NY   N   + + L+YK  I  I    +P  + C
Sbjct: 330 YNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVPIYC 365


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 378  TTAKTRLLYYANYTFQNIFIFTR 310
            TT  T L  Y NYT Q +  FTR
Sbjct: 1174 TTVLTGLRKYTNYTIQ-VLAFTR 1195


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 378  TTAKTRLLYYANYTFQNIFIFTR 310
            TT  T L  Y NYT Q +  FTR
Sbjct: 1170 TTVLTGLRKYTNYTIQ-VLAFTR 1191


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 398 CSNRAYPRLQKLDYCITRT 342
           C NR   R  K+ +CI RT
Sbjct: 484 CINRVVQRGTKMQFCIFRT 502


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 759 FSKISAITRLLSKVKNKYVSPSLKL 685
           FSKIS + R  S +  K V+P  +L
Sbjct: 6   FSKISKVDRSTSPLPRKPVNPVQEL 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,779
Number of Sequences: 438
Number of extensions: 3310
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)