Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120466.Seq
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15080.1 68418.m01767 protein kinase, putative similar to pro...    29   3.6  
At3g28690.1 68416.m03580 protein kinase, putative similar to pro...    29   4.8  

>At5g15080.1 68418.m01767 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           Swiss-Prot:Q06548
          Length = 493

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 425 KKWVN*LNFCSNRAYPRLQKL-DYCITRTTLFKIYLFL 315
           K+W+  +NF  N  +P L KL  YCI       +Y F+
Sbjct: 191 KEWLAEINFLGNLLHPNLVKLVGYCIEDDQRLLVYEFM 228


>At3g28690.1 68416.m03580 protein kinase, putative similar to
           protein kinase APK1A [Arabidopsis thaliana]
           Swiss-Prot:Q06548
          Length = 376

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 425 KKWVN*LNFCSNRAYPRLQKL-DYCITRTTLFKIYLFL 315
           K+W+  +NF  N  +P L KL  YC+       +Y F+
Sbjct: 75  KEWLAEINFLGNLVHPSLVKLVGYCMEEDQRLLVYEFM 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,444,355
Number of Sequences: 28952
Number of extensions: 200909
Number of successful extensions: 355
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)