Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120464.Seq
         (828 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5TKD6 Cluster: Putative uncharacterized protein OSJNBa...    35   2.2  
UniRef50_Q5K9V7 Cluster: Endocytosis-related protein, putative; ...    33   6.6  

>UniRef50_Q5TKD6 Cluster: Putative uncharacterized protein
          OSJNBa0017O06.13; n=1; Oryza sativa (japonica
          cultivar-group)|Rep: Putative uncharacterized protein
          OSJNBa0017O06.13 - Oryza sativa subsp. japonica (Rice)
          Length = 244

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 7  EIIYFNCYLSQCFRIYNLLKDKW 75
          +I+YF CY+  C  I++LLK+ W
Sbjct: 16 QIVYFGCYMKICLAIFSLLKNMW 38


>UniRef50_Q5K9V7 Cluster: Endocytosis-related protein, putative;
           n=4; cellular organisms|Rep: Endocytosis-related
           protein, putative - Cryptococcus neoformans
           (Filobasidiella neoformans)
          Length = 1601

 Score = 33.5 bits (73), Expect = 6.6
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +2

Query: 524 SPFLRYAASLRFGGKATLPS*TNATAGTKNGISLPLGE 637
           +PF R+ AS R   +A +PS T ATAG+ +  S P G+
Sbjct: 773 NPFDRFLASGRSTSQAQVPSSTAATAGSPSNASTPTGQ 810


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 725,303,321
Number of Sequences: 1657284
Number of extensions: 14009843
Number of successful extensions: 27317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27311
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71734006925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)