Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120464.Seq
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    27   4.3  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   4.3  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    25   9.9  

>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 699 E*NKFNVRLKRLYRALNIDVTVQNHALFG 785
           E  K  + +   YRAL  D T +N+AL+G
Sbjct: 140 EVEKHYIEITNAYRALTDDKTRENYALYG 168


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 245 YYFDPVTDSLIVSTLCSIQFSIL 313
           YYF PV   L+V +L  + FSI+
Sbjct: 182 YYFYPVISYLVVVSLAYVSFSII 204


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 212 IDPTMGPILD-KYYFDPVTDSLIVSTLCSIQFSILTRINC 328
           IDP  G  +   Y+F+         T C+I F+  T +NC
Sbjct: 150 IDPAWGFAVSWNYFFNYFVTFPFELTTCAITFTFWTDVNC 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,170,071
Number of Sequences: 5004
Number of extensions: 64145
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)