Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120464.Seq
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)          30   2.0  

>SB_13395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = -3

Query: 814 LNTNRAEHRKPNKAWFCTVTSMFRARYNLFNRTLNLF 704
           ++ N+  HR+ ++A   TVT ++RARYN   R+ + F
Sbjct: 491 IHENKTCHRRFDRARPGTVTQVYRARYNFLVRSFSRF 527


>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
          Length = 486

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 793 HRKPNKAWFCTVTSMFRARYNLFNRTLNLFYSWSRTHIGHSR--YKITGNHYTTLT 632
           H + NK     V ++ +ARYN  + T  L ++W  THI   R  +   G H TT T
Sbjct: 97  HTRYNK--HIKVRTVQQARYNTHSATRTLRHAWYSTHIAVRRVQHAHCGTHGTTRT 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,322,816
Number of Sequences: 59808
Number of extensions: 437162
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)