Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120464.Seq
         (828 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   2.8  
EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton anti...    24   5.0  
Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL...    23   8.7  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +1

Query: 541 RCLAPLRWKGNFTFLDKCYSRYQKWYLFTAR*VLCNGCLLFCIGYVQC 684
           +  AP+   G+ TFL  C   +  W       +    C  +C+ + +C
Sbjct: 778 KIFAPINNTGDCTFLQDCIEIFCSWCKRNGLTICIEKC--YCVSFSRC 823


>EF014219-1|ABJ91581.1|  647|Anopheles gambiae cation proton
           antiporter protein.
          Length = 647

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 476 IMLCNLIDIIGSLNTFLIQETIKKINLNGRLRVLTA 369
           I L  L  +IG L   ++ + +  +NL+G  +++TA
Sbjct: 197 ISLTTLPRLIGMLMVGILFQNVGWVNLDGEFQIVTA 232


>Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL10
           protein.
          Length = 204

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
 Frame = -3

Query: 805 NRAEHRKPNKAWFCTVTSMFRARYNL-----FNRTLNLFYSWSRTHIGHSR 668
           N A  R PN  W C      R    L      +R L   Y +S+T IG SR
Sbjct: 139 NNAIRRDPNVNWICNAVHKHRELRGLTSAGKSSRGLGKAYRYSQT-IGGSR 188


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 789,721
Number of Sequences: 2352
Number of extensions: 15642
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 88150236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)