Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120464.Seq
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine r...    29   4.1  

>Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical
           protein E01G4.5 protein.
          Length = 385

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
 Frame = +1

Query: 475 ISQSYDFDFVQFIG*YFAVSPLRCLAPLRWKGNFTFLDKCYSRYQKWYLFTAR*VLCNGC 654
           I   Y+ +  +FIG +F       +  +R K    F DKCY   +K +        C  C
Sbjct: 250 IDAEYNPEGTKFIGLFFYDGHYEVVDHIRGKKGAHFCDKCYQFVEKNHAKNCE-KKCRSC 308

Query: 655 LLFCIGY----VQCAFCSMSKINSMC 720
             F  G     V C  C+++  N MC
Sbjct: 309 GHFECGQQEKDVVCDTCNVTFKNQMC 334


>AF067945-16|AAC17675.1|  341|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 12 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +1

Query: 442 LPIISIRLHNIISQSYDFDFVQFIG*YFAVS-PLRCLAPLRWKGNFTFLDKCY-SRYQKW 615
           L II +RLH+++  + DFD    +    A++  + C+        F+ L++C+ +RY K 
Sbjct: 73  LAIIVMRLHSLLGFTDDFDIGSNVVFNGAMTFSVYCIVAAMCSLPFSILERCFATRYLKD 132

Query: 616 YLFTAR*VLCNGCLLFCIGYV 678
           Y   +R    +  L+F + ++
Sbjct: 133 YEANSR-AYISYALVFLLNFI 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,764
Number of Sequences: 27780
Number of extensions: 351700
Number of successful extensions: 722
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)