Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120464.Seq
         (828 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   3.4  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   3.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   3.4  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   6.0  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 435 VKAANNINKIAQHYFAIL*F*FCAIYWLIF 524
           +K  N I+K ++  F +    F AIYW+ +
Sbjct: 458 IKDVNIIDKYSRIIFPVSFMLFNAIYWIFY 487


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 423 SRNYKENQSQWPFKSIDSI-HIILHTNTNYK*MQFIRVKIL 304
           SR+  E +     K I S+ +  +H N NYK +Q+  +  +
Sbjct: 289 SRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNINYI 329


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 423 SRNYKENQSQWPFKSIDSI-HIILHTNTNYK*MQFIRVKIL 304
           SR+  E +     K I S+ +  +H N NYK +Q+  +  +
Sbjct: 300 SRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNINYI 340


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 423 SRNYKENQSQWPFKSIDSI-HIILHTNTNYK*MQFIRVKIL 304
           SR+  E +     K I S+ +  +H N NYK +Q+  +  +
Sbjct: 300 SRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNINYI 340


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 423 SRNYKENQSQWPFKSIDSI-HIILHTNTNYK*MQFIRVKIL 304
           SR+  E +     K I S+ +  +H N NYK +Q+  +  +
Sbjct: 289 SRDRTERERSREPKIISSLLNNTIHNNNNYKKLQYYNINYI 329


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 690 ERTLDIADTK*QATITQHSPSGKEIPFLVPAVA 592
           E  +DIAD++    +++ SPS    P + P  A
Sbjct: 863 ELQVDIADSQQPLNLSKKSPSPSPRPLVGPCKA 895


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,972
Number of Sequences: 438
Number of extensions: 4733
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)