Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120464.Seq
         (828 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger) fa...    29   2.8  
At5g60920.1 68418.m07642 phytochelatin synthetase, putative / CO...    28   8.7  
At5g07900.1 68418.m00912 mitochondrial transcription termination...    28   8.7  

>At3g26730.1 68416.m03342 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 772

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -1

Query: 435 HILNSRNYKENQSQWPFKSIDSIHIILHT 349
           H +++++ K+N +   ++S+D  HIILHT
Sbjct: 508 HQIDTKDLKDNDAYNFYQSVDGQHIILHT 536


>At5g60920.1 68418.m07642 phytochelatin synthetase, putative / COBRA
           cell expansion protein COB, putative similar to
           phytochelatin synthetase GI:29570314; similar to
           GB:AAK56072; identified in Roudier, et al, Plant Phys.
           (2002) 130:538-548 (PMID:12376623); identical to cDNA
           putative phytochelatin synthetase GI:3559804; contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 456

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 489 IRLRNNVVQSY*YYWQP*HILNSRNYKENQSQW 391
           IR+  +V Q+Y  YW+    + + NY+ N +QW
Sbjct: 300 IRVHWHVKQNYKEYWRVKITITNFNYRLNYTQW 332


>At5g07900.1 68418.m00912 mitochondrial transcription termination
           factor family protein / mTERF family protein low
           similarity to SP|Q99551 Transcription termination
           factor, mitochondrial precursor (mTERF) {Homo sapiens};
           contains Pfam profile PF02536: mTERF
          Length = 405

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 556 LRWKGNFTFLDKCYSRYQKW 615
           L  KGN +  DKC+  YQ+W
Sbjct: 270 LSGKGNKSIWDKCFEVYQRW 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,608,530
Number of Sequences: 28952
Number of extensions: 303263
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)