Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120463.Seq
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0145 + 7163922-7165604                                           31   0.96 
02_05_0201 + 26687369-26689228                                         31   1.3  
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855...    30   2.2  
05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    29   2.9  

>02_02_0145 + 7163922-7165604
          Length = 560

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 22/80 (27%), Positives = 35/80 (43%)
 Frame = +1

Query: 49  SFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDV 228
           SF A+N +     P   + + N  ++ NL  N+     ++  N F ST   N+I   ++V
Sbjct: 475 SFTAENNQFSGELPTDMSRLANL-TMLNLAGNQLLTTVKIYINNFASTLPSNKIVSKSNV 533

Query: 229 PNIRNVFQGFQTLK*THCAN 288
             I    QG   +   HC N
Sbjct: 534 KEIGLQSQG--KMGFAHCDN 551


>02_05_0201 + 26687369-26689228
          Length = 619

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 487 PPPAKSMPTPATFKVLM*LCKRGFCC 410
           PPP +  P P T++    +CK+GF C
Sbjct: 23  PPPPQPPPPPLTYRHHCKVCKKGFMC 48


>06_03_0077 +
           16284106-16284128,16284552-16284795,16285490-16285591,
           16286347-16287057
          Length = 359

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 320 LPHQTDAIQCSQTKLPR---DQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRL 490
           LP    A   S+TK PR   D  A A R  + TA + PF  +H  +E   +G   GRRR 
Sbjct: 36  LPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK-GRRRR 94

Query: 491 S 493
           S
Sbjct: 95  S 95


>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 506 RTLVQDIINAINRTGGSYYVQGRNAGENVESCLLLQRTCRQDRNL-AQSDVN 658
           R LVQ +   +NR     Y   R+ G + +  +L +R C    NL A  D+N
Sbjct: 27  RKLVQSLKEIVNRPEAEIYAALRDCGMDPDEAILFKRQCGFKVNLRAWYDIN 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,115,225
Number of Sequences: 37544
Number of extensions: 440510
Number of successful extensions: 1144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)