Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120462.Seq
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identica...   106   2e-23

>At2g07687.1 68415.m00937 cytochrome c oxidase subunit 3 identical
           to cytochrome c oxidase subunit 3 (GI:15215914)
           [Arabidopsis thaliana]; similar to Cytochrome c oxidase
           polypeptide III (EC 1.9.3.1) (Swiss-Prot:P92514)
           [Arabidopsis thaliana]
          Length = 265

 Score =  106 bits (254), Expect = 2e-23
 Identities = 52/95 (54%), Positives = 64/95 (67%)
 Frame = +1

Query: 454 IIFNYFIRXLFYYFTSI*NIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRH 633
           ++    +  +F  F  +   +A FTI+D IYGSTFF+ATGFHG HVIIGTLFL+IC IR 
Sbjct: 166 LVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGIRQ 225

Query: 634 LNNHFSKNHHFGFEAAA*Y*HFVDVDDYFFTFLFI 738
              H +K HH GFEAAA Y HFVDV    + FLF+
Sbjct: 226 YLGHLTKEHHVGFEAAAWYWHFVDV---VWLFLFV 257



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 33/78 (42%), Positives = 43/78 (55%)
 Frame = +2

Query: 275 HRRLSPNIEIGRI*PPSRITPFNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQR 454
           H  L+P +EIG I PP  I   +P++IP LNT IL  SG  VT AHH+++     +    
Sbjct: 106 HSSLAPAVEIGGIWPPKGIEVLDPWEIPFLNTPILPSSGAAVTWAHHAILAGKEKRAVYA 165

Query: 455 LFLTILLGFYFTILQAYE 508
           L  T+LL   FT  Q  E
Sbjct: 166 LVATVLLALVFTGFQGME 183


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,089,591
Number of Sequences: 28952
Number of extensions: 172749
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)