Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120461.Seq
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 204 1e-53
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 111 8e-26
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 100 2e-22
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 100 4e-22
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 4e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 7e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 54 3e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 5e-05
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 31 0.23
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 30 0.40
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.40
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.2
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 28 1.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 2.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 2.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.1
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 27 2.8
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.7
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 6.5
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.5
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.5
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 8.6
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 25 8.6
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 204 bits (498), Expect = 1e-53
Identities = 105/159 (66%), Positives = 114/159 (71%), Gaps = 3/159 (1%)
Frame = +3
Query: 249 QKGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKGNREKMT 428
++GILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 429 QIMFETFNTPAMYVAIQAVLSLYASGRPPVSCWTPATVSPTTCPSTKDTHSPTPFCVWT* 608
QI+FETFN PA YVAIQAVLSLYASGR T P + P +
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEG--YALPHAIMRL 178
Query: 609 PVATH---RYLMKILTERGYSFTTPPSGKIVRDIKEKLC 716
+A YLMKIL ERGY+F+T +IVRDIKEKLC
Sbjct: 179 DLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLC 217
Score = 126 bits (305), Expect = 3e-30
Identities = 56/61 (91%), Positives = 60/61 (98%)
Frame = +1
Query: 73 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 252
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 253 R 255
R
Sbjct: 62 R 62
Score = 86.2 bits (204), Expect = 4e-18
Identities = 48/79 (60%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = +2
Query: 509 TTGIVLDSGDGVSHNVPIYEGYALPHAILRLDLAGRD-SQIPHEDPHRARLLVHYTAERE 685
TTGIVLDSGDGV+H VPIYEGYALPHAI+RLDLAGRD + + TAERE
Sbjct: 148 TTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAERE 207
Query: 686 NRS*HQGEAVYVALDFEQE 742
+ + YVALDFEQE
Sbjct: 208 IVRDIKEKLCYVALDFEQE 226
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 111 bits (268), Expect = 8e-26
Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Frame = +3
Query: 252 KGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKGNREKMTQ 431
+ +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP NREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 432 IMFETFNTPAMYVAIQAVLSLYASGRPP---VSCWTPATVSPTTCPSTKDTHSPTPFCVW 602
MFE + +YVAIQAVLSLYA G V T S H V
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDV- 180
Query: 603 T*PVATHRYLMKILTERGYSFTTPPSGKIVRDIKEKLC 716
AT RYL+ +L +GY+F + VR++KEKLC
Sbjct: 181 AGRDAT-RYLISLLLRKGYAFNRTADFETVREMKEKLC 217
Score = 55.6 bits (128), Expect = 7e-09
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +1
Query: 79 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 252
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 253 R 255
R
Sbjct: 62 R 62
Score = 54.4 bits (125), Expect = 2e-08
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = +2
Query: 509 TTGIVLDSGDGVSHNVPIYEGYALPHAILRLDLAGRDS 622
++G+V+DSGDGV+H VP+YE L H + RLD+AGRD+
Sbjct: 148 SSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDA 185
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 100 bits (240), Expect = 2e-22
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +3
Query: 264 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKGNREKMTQIMFE 443
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 444 TFNTPAMYVAIQAVLSLYAS 503
+FN +Y+A+QAVL+L AS
Sbjct: 149 SFNCAGLYIAVQAVLALAAS 168
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/39 (56%), Positives = 29/39 (74%)
Frame = +2
Query: 503 RSTTGIVLDSGDGVSHNVPIYEGYALPHAILRLDLAGRD 619
RS TG V+DSGDGV+H +P+ EGY + +I + LAGRD
Sbjct: 177 RSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRD 215
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +1
Query: 91 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 240
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 99.5 bits (237), Expect = 4e-22
Identities = 58/159 (36%), Positives = 85/159 (53%), Gaps = 4/159 (2%)
Frame = +3
Query: 252 KGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKGNREKMT 428
+G+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 429 QIMFETFNTPAMYVAIQAVLSLYASGRPP---VSCWTPATVSPTTCPSTKDTHSPTPFCV 599
+ +ET N PA+ ++Q VL+LYAS R + C T S + +
Sbjct: 126 EYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEI 185
Query: 600 WT*PVATHRYLMKILTERGYSFTTPPSGKIVRDIKEKLC 716
V YL L + G+ + +IVR+IKEK C
Sbjct: 186 GGRDVTD--YLQLQLRKSGHELVSSAEKEIVREIKEKCC 222
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = +1
Query: 91 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ R
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR 66
Score = 56.4 bits (130), Expect = 4e-09
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 476 PSRALAVRVRSTTGIVLDSGDGVSHNVPIYEGYALPHAILRLDLAGRD-SQIPHEDPHRA 652
P AL R TTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD + ++
Sbjct: 143 PVLALYASAR-TTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKS 201
Query: 653 RLLVHYTAERENRS*HQGEAVYVALDFEQE 742
+ +AE+E + + YVA DF E
Sbjct: 202 GHELVSSAEKEIVREIKEKCCYVASDFRSE 231
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 69.7 bits (163), Expect = 4e-13
Identities = 32/83 (38%), Positives = 47/83 (56%)
Frame = +3
Query: 261 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKGNREKMTQIMF 440
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 441 ETFNTPAMYVAIQAVLSLYASGR 509
E+ PA Y+A Q + +ASG+
Sbjct: 123 ESLRCPATYLAKQETCAAFASGK 145
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 76 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 177
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 65.7 bits (153), Expect = 7e-12
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +3
Query: 276 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKGNREKMTQIMFETFNT 455
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 456 PAMYVAIQAVLSLYASGRPPVS 521
P++ I + S Y + +P S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 91 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 186
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 506 STTGIVLDSGDGVSHNVPIYEGYALPHAILRLDLAGRDS 622
S++GIVL+ G+ SH +P+ G + R+ G S
Sbjct: 164 SSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQS 202
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 53.6 bits (123), Expect = 3e-08
Identities = 22/75 (29%), Positives = 42/75 (56%)
Frame = +3
Query: 285 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKGNREKMTQIMFETFNTPAM 464
+GI+ +W+ W +L+V P E+ +++TE NP+ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 465 YVAIQAVLSLYASGR 509
Y+ QAV +A+ +
Sbjct: 134 YLTKQAVCVAFANSK 148
Score = 38.7 bits (86), Expect = 9e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +1
Query: 76 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 246
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 42.7 bits (96), Expect = 5e-05
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 276 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKGNREKMTQIMFE 443
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 444 TFNTPAMYVAIQAVLSLYASG 506
P +A + ++ LYA G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIG 192
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 30.7 bits (66), Expect = 0.23
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 336 FYNELRVAPEEHPVLLTE--APLNPKGNREKMTQIMFETFNTPAM---YVAIQ 479
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 29.9 bits (64), Expect = 0.40
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +3
Query: 381 LTEAPLNPKGNREKMTQIMFETFNTPAMYVAIQAVLSLYASGRPPVSCWTPATVSPTTCP 560
L+ P NP + + + I+ E V + VLS + RP V P+TV P T P
Sbjct: 361 LSSVPTNPTPSEDDIQLILKELQKYLVFPVDREDVLSAWCGIRPLVR--DPSTVPPGTDP 418
Query: 561 STKDT 575
+T +T
Sbjct: 419 TTGET 423
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.40
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 233 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 72
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 244 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 155
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +3
Query: 480 AVLSLYASGRPPV---SCWTPATVSPTTCPSTKDTHSPTPFCVWT*PVAT 620
++LSLYAS RP V S T AT P + T S P+ + P T
Sbjct: 218 SILSLYASPRPQVSSSSITTNATYQNLPSPVSTSTTSSQPYGAFHQPATT 267
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 510 PPVSCWTPATVSPTTCPSTKDTHSP 584
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 518 IVLDSGDGVSHNVPIYEGYALPHAILRLDLAGR 616
+V+DSG +H +P+ + A+ R+D+ G+
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGK 191
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 136 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 255
G+ PRA F ++ P H G+++ M KD G+E S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPK 539
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 414 REKMTQIMFETFNTPAMYVAIQAVLSLYASGRPPVSCWTPATVSPTTCPSTKDTHSPTP 590
RE++ Q+ + P+ Y+ LS Y R P S P+ PST HSP P
Sbjct: 134 RERLNQVELQLSERPSSYLGYHNNLSPY---RSPNSY-------PSLLPSTHSPHSPAP 182
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.8
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -1
Query: 267 GSGYPFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 94
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 236 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 120
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 355 SPPRNTQSCSLRLPSTPRATER 420
SPP++T+ S R PS P + E+
Sbjct: 285 SPPQSTRPSSTRFPSVPLSDEK 306
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = -3
Query: 262 RIPFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTRREEHHLLRNR 125
R PF S+ H HK YRPSR + + R + R+R
Sbjct: 176 RFPFESL-HKNHKHYENSYRPSRSQNNSHYNDKSFHRSRYSRARSR 220
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 378 LLTEAPLNPKGNREKMTQIMFETFN 452
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 118 TYRSHCLLPTRQLLRRTS*ISEI 50
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 471 AIQAVLSLYASGRPPVSCWTPATVSPTTCPSTKDTHSP 584
++Q + + P S TP + T+ P+T DTH P
Sbjct: 266 SVQQQQKQHQQKKTPQSGSTPQMQNTTSQPTTHDTHPP 303
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 301 TGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPSTPRATERR*PRSCSKHSTRPP 462
+ MT R+ + PS+ + P+ + + S+P A+ + R S S RPP
Sbjct: 220 SSMTLRKRSVSPSSQNTARSPKRMATEPIEPASSPAASNQAIRR--SSRSRRPP 271
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 8.6
Identities = 24/95 (25%), Positives = 34/95 (35%)
Frame = +3
Query: 402 PKGNREKMTQIMFETFNTPAMYVAIQAVLSLYASGRPPVSCWTPATVSPTTCPSTKDTHS 581
P G K T F+ N V L + + P+ + P + T+ P T
Sbjct: 450 PLGASPKDT--FFDIINNQKYVVNTDGTLKVVITNGFPIVLY-PTSKIETSLPQFTATLL 506
Query: 582 PTPFCVWT*PVATHRYLMKILTERGYSFTTPPSGK 686
P V + V TH L +L GY P G+
Sbjct: 507 PEITFVPSITVTTHYVLPTLLAPLGYDIREHPGGQ 541
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,229
Number of Sequences: 5004
Number of extensions: 79745
Number of successful extensions: 252
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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