Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120460.Seq
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    31   0.013
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   1.2  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.2  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   4.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   4.6  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   4.6  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   8.1  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 410 PSRQPPTAESGLGGSVAATGVPALVQARGHIIERFPSFP 526
           P    P+  SGLGG ++   +PAL    GH +E  P FP
Sbjct: 76  PYAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESVP-FP 113


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 430 SGERPWRQRCCYRRPSARSG*RTH 501
           SGE+P+R   C RR S  S   TH
Sbjct: 45  SGEKPFRCPVCDRRFSQSSSVTTH 68



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 409 TVASTSDSGERPWRQRCC 462
           T    + SGERP+R R C
Sbjct: 66  TTHMRTHSGERPYRCRLC 83


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 430 SGERPWRQRCCYRRPSARSG*RTH 501
           SGE+P+R   C RR S  S   TH
Sbjct: 301 SGEKPFRCPVCDRRFSQSSSVTTH 324



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 409 TVASTSDSGERPWRQRCC 462
           T    + SGERP+R R C
Sbjct: 322 TTHMRTHSGERPYRCRLC 339


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +1

Query: 175 PDL-VNDVHVSMSKNSRQPYCVSKEAGHKPVLNHGVLDVL 291
           PD  + ++ V + +   + YC+    G    +N  V DVL
Sbjct: 318 PDAGLGNLSVCIDQQPWRSYCIQPPCGQLNPINPNVFDVL 357


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 430 SGERPWRQRCCYRRPSARSG*RTH 501
           +GERP++ + C R  + +   +TH
Sbjct: 158 TGERPFKCKICGRAFTTKGNLKTH 181


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 271 DSALVCDQPPC 239
           +S  +CD PPC
Sbjct: 5   ESKAICDNPPC 15


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 133 HPAPSHSSLNTPTL 92
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,708
Number of Sequences: 336
Number of extensions: 3425
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)