Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120460.Seq
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 109 3e-25
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 109 3e-25
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||... 29 0.96
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 2.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 5.1
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra... 26 6.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 8.9
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 109 bits (263), Expect = 3e-25
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 410
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112
Score = 97.9 bits (233), Expect = 1e-21
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +1
Query: 508 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 687
+IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRR 205
Query: 688 GPS*SSTRIRV*IAAFRNIPGVELL 762
GP + AFRNIPGVE++
Sbjct: 206 GPLVVFNEDTGIVKAFRNIPGVEIV 230
Score = 77.4 bits (182), Expect = 2e-15
Identities = 35/62 (56%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 443 LGGSVAATGVPALVQARGHIIERFPSFP 526
+ +VAA+GVP+L+ ARGH IE P P
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVP 151
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 109 bits (263), Expect = 3e-25
Identities = 46/52 (88%), Positives = 48/52 (92%)
Frame = +3
Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 410
QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 61 QTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112
Score = 97.5 bits (232), Expect = 2e-21
Identities = 46/85 (54%), Positives = 62/85 (72%)
Frame = +1
Query: 508 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 687
+IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRR 205
Query: 688 GPS*SSTRIRV*IAAFRNIPGVELL 762
GP + AFRNIPGVE++
Sbjct: 206 GPLVVFNEDAGIVKAFRNIPGVEIV 230
Score = 78.2 bits (184), Expect = 1e-15
Identities = 36/62 (58%), Positives = 46/62 (74%)
Frame = +1
Query: 73 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 252
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 253 HK 258
H+
Sbjct: 60 HQ 61
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +2
Query: 443 LGGSVAATGVPALVQARGHIIERFPSFP 526
+ +VAA+GVP+L+ ARGH IE P P
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVP 151
>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 28.7 bits (61), Expect = 0.96
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 672 SYPA*GALIIFNKDQGLNRGLPQHP 746
SYPA G + + N + N+G+ QHP
Sbjct: 14 SYPAGGIMSVSNSNADTNQGVTQHP 38
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 211 KNSRQPYCVSKEAGHKPVLNHGVLDVLSP 297
++ +PY ++ + + P+ N G LD++SP
Sbjct: 1054 EDGNEPYAITDDNDYLPMANTGSLDLVSP 1082
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/42 (28%), Positives = 17/42 (40%)
Frame = +2
Query: 374 YVRPHEALAALAPSRQPPTAESGLGGSVAATGVPALVQARGH 499
+ PH L + AP QP E +V P+ +GH
Sbjct: 854 FYEPHSYLESPAPEPQPSYEEESFNATVIHAPTPSTATFQGH 895
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 134 APCTVSLFSEYTDTKGRATDRLISLL 57
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
3-phosphatidyltransferase Pis1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -1
Query: 91 KVG-LPIDSFRYFSEAIPLKY-TLIAVI 14
K+G LP+ SF Y + +PL Y TL+AV+
Sbjct: 186 KLGYLPVPSFIYSTGELPLSYPTLLAVL 213
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 561 LVDLLDFVGYNQGKLG-NLSIMCPLA*TSAGTPVAATLPPRPLS 433
L+D L +G +Q ++ N + SAGTP + + PP P S
Sbjct: 192 LIDSLMKMGISQDQIAENADFVKAYLNESAGTPTSTSAPPIPPS 235
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,922
Number of Sequences: 5004
Number of extensions: 56294
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -