Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120460.Seq
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   111   5e-25
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   111   5e-25
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    31   1.1  
At1g26400.1 68414.m03220 FAD-binding domain-containing protein s...    30   1.9  
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp...    29   3.4  
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp...    29   3.4  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    29   4.5  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    29   4.5  
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    28   7.8  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    28   7.8  

>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  111 bits (267), Expect = 5e-25
 Identities = 47/52 (90%), Positives = 49/52 (94%)
 Frame = +3

Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 410
           QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 67  QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 118



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
 Frame = +1

Query: 511 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 690
           +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKG
Sbjct: 153 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 212

Query: 691 P-S*SSTRIRV*IAAFRNIPGVEL 759
           P     T     + AFRN+PGVEL
Sbjct: 213 PLVVFGTEGAKIVKAFRNLPGVEL 236



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
 Frame = +1

Query: 76  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 249
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 250 GHK 258
           GH+
Sbjct: 65  GHQ 67



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +2

Query: 452 SVAATGVPALVQARGHIIERFPSFP 526
           ++AAT VPALV ARGH IE  P  P
Sbjct: 133 AIAATAVPALVMARGHKIENVPEMP 157


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  111 bits (267), Expect = 5e-25
 Identities = 47/52 (90%), Positives = 49/52 (94%)
 Frame = +3

Query: 255 QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 410
           QTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH
Sbjct: 66  QTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWH 117



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 40/84 (47%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
 Frame = +1

Query: 511 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 690
           +PE+PLVV+D  + + KT  A+  L+++ A+ D  K   S  +R GKGKMRNRR I RKG
Sbjct: 152 VPEMPLVVSDSAEAVEKTSAAIKVLKQIGAYDDAEKAKNSIGIRPGKGKMRNRRYISRKG 211

Query: 691 P-S*SSTRIRV*IAAFRNIPGVEL 759
           P     T     + AFRN+PGVEL
Sbjct: 212 PLVVYGTEGSKIVKAFRNLPGVEL 235



 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
 Frame = +1

Query: 67  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 240
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 241 KEAGHK 258
           K+AGH+
Sbjct: 61  KKAGHQ 66



 Score = 37.1 bits (82), Expect = 0.013
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +2

Query: 452 SVAATGVPALVQARGHIIERFPSFP 526
           ++AAT VPALV ARGH IE  P  P
Sbjct: 132 AIAATAVPALVMARGHKIENVPEMP 156


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +1

Query: 91  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHKPVLN 270
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+      + V  
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICIYALGRMRSVWG 408

Query: 271 HGVLDVLSPE 300
              LD   PE
Sbjct: 409 EDALD-FKPE 417


>At1g26400.1 68414.m03220 FAD-binding domain-containing protein
           similar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 527

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 569 CLVLLISWTLSATTKGSSGIFQ*CV 495
           CLVLL+S   +A TK  SGIF  C+
Sbjct: 9   CLVLLVSILRAAVTKPDSGIFTGCL 33


>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 844

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 381 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 262
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam domain PF01805:
           Surp module
          Length = 843

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 381 RTYVHHDTCYRRHPDRTY-EYHHHGHAEFGRQHVQYPMIQH 262
           R++ H    + +H D +  E+HHH H    R+H     ++H
Sbjct: 735 RSHHHRSRKHEKHRDSSDDEHHHHRHRSSRRKHEDSSDVEH 775


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 216 LEAALLREQGGWSQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAP 386
           +  AL+R + G ++ +AE   + + + ++P   G G    G+   G FGN   GG  F  
Sbjct: 76  MAVALIRRRMG-AKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGD 134

Query: 387 TKPW 398
              W
Sbjct: 135 ISKW 138


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 142 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHKPVLNHGVLDVLSPE 300
           P+PF  K+P +PD++   H  +  NSR  +C+      K V     ++   PE
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCLYSLGRMKSVWGEDAME-FKPE 434



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +1

Query: 142  PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHKPVLNHGVLDVLSPE 300
            P+PF  K+P +PD++   H  +  NS+  +C+      K V     L+   PE
Sbjct: 857  PVPFQHKSPTKPDVLPSGH-KVDANSKILFCLYSLGRMKSVWGEDALE-FKPE 907


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 369 HHDTCYRRHPDRTYEYHHHGHAEF 298
           HH   Y  H    Y Y +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 145 GAWLHPAPSHSSLNTPTLKVGLPID--SFRYFSEAIPLKY 32
           G W+H   SH+  ++  L VG+ +      Y+S + P++Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,095,008
Number of Sequences: 28952
Number of extensions: 331790
Number of successful extensions: 1111
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)