Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120457.Seq
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    32   0.085
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.2  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   3.2  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.4  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   7.4  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   7.4  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 31.9 bits (69), Expect = 0.085
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = -3

Query: 416 LQNYTVLKRLSNGFIDKSVDVGSISELQKFNFKINRLTSYISNIFEYEFVVLEHIYPQCT 237
           L N T L    N F+   + +  +S+L+  NF  N L+   S I     V L+H+Y Q  
Sbjct: 524 LVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQISSKI--GSLVKLKHLYLQFN 581

Query: 236 SLTPR 222
            L+ R
Sbjct: 582 DLSNR 586


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +1

Query: 427 AHLE*-LKEIFFNKSSVVYANALSTHMLKQ 513
           AH+E  LK + F+KS++ Y +A+  H LKQ
Sbjct: 24  AHVEKVLKTVEFDKSALRYIDAILDHHLKQ 53


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 470 DDLLKNISFSHSKCAPFKLQNYTVLKRLSNGFIDKSVDV 354
           +D+L +I     K  PF L+    ++ L+ G IDK + +
Sbjct: 267 EDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISI 305


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 408 LHRFEAVEQRVYRQVC 361
           LH FE    RVY Q+C
Sbjct: 180 LHDFETTSNRVYSQIC 195


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +1

Query: 301 LVSRFILKLNFCNSLIEPTSTDLSINPLLNRFKTV*FCSLKGAHLE*LKEIFF 459
           LV +++L   FC S+++    ++++NP ++ +     C L       LK++ F
Sbjct: 268 LVYKWVLNF-FCKSVVKQAEAEVAVNP-ISAYPLAKVCLLLQTQNADLKDLLF 318


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 347 ISELQKFNFKINRL-TSYISNIFEYE--FVVLEHIYPQCTSLTP 225
           I E  + N + +   T + +N  E    +V L + YP CT +TP
Sbjct: 129 IDEFDQLNLQCSACGTRFFNNDNENTRCYVKLNYCYPDCTEITP 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,229
Number of Sequences: 5004
Number of extensions: 51094
Number of successful extensions: 163
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)