Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120457.Seq
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0770 - 5756200-5756741,5756790-5757286,5757356-5757782,575...    31   0.82 
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    29   4.4  
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    28   5.8  
01_07_0137 - 41381294-41382433                                         28   7.6  
01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965           28   7.6  

>06_01_0770 -
           5756200-5756741,5756790-5757286,5757356-5757782,
           5757854-5757911
          Length = 507

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 125 DTPPFYFINTRDNFRDNIAEHVFDMLLERHG 33
           D  P  F+NT D+F   I +H+ + + E+HG
Sbjct: 318 DQCPASFLNTSDDFTARIVDHMVEHIKEQHG 348


>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
            3973665-3973982,3974565-3974763,3974937-3975202,
            3975288-3975574,3976714-3977818,3977900-3978046,
            3978146-3978226,3978315-3978540,3978622-3978761,
            3979539-3979645,3979739-3979841
          Length = 3638

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 265  TTNSYSKMFDM*LVSRFILKLNFCNSLIEPTSTDLSIN 378
            T  SY K+ +  + S F+L  +    L++P  T+LSIN
Sbjct: 1092 TLQSYCKLLEYCVNSSFLLSPSHNQLLVQPMVTELSIN 1129


>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
            28256701-28256800,28256887-28256972,28257078-28257239,
            28257965-28258101,28258233-28258281,28258688-28258746,
            28258862-28258896,28259384-28259433,28260173-28260332,
            28260898-28260963,28261065-28261162,28261649-28261696,
            28262114-28262242,28262667-28262769,28262858-28262954,
            28263181-28263241,28263659-28263740,28263845-28263962,
            28264039-28266325
          Length = 1481

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 654  ALAGCRRCSKSPILRLVAMLPTCAVCCGSS 565
            ALA CRRC++ P+   + +L   A  C +S
Sbjct: 1315 ALADCRRCAQRPVAGGLPLLDCSACRCATS 1344


>01_07_0137 - 41381294-41382433
          Length = 379

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 203 WPSLVFVSALMTCTVDKYVLK--LQTRTRKCLICSWLADLS*N*TFATR**SPRPQTC 370
           W +L F   +    VD    K    T +R+  + +W  D S +   ATR   PRP+ C
Sbjct: 182 WTALWFPKWMQHKYVDVVYHKGAFYTASREAAVTAWAPDASSSGLHATRVTEPRPEKC 239


>01_01_0866 - 6765761-6766413,6766805-6766906,6767693-6768965
          Length = 675

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 7/63 (11%)
 Frame = +3

Query: 468 VSSVRKRVVYAHAKTEPSIFI-IYLIFCETLQLDLNH------SRQRTSVAWQLNARLAI 626
           VS++    + +H K EPS FI + L FC  L + + +         RT + W+   R+A+
Sbjct: 419 VSNMLHVPICSHVKLEPSKFIFLVLDFCLKLAMLIENELIGKRGEDRTPLNWETRVRIAL 478

Query: 627 SSS 635
            ++
Sbjct: 479 GAA 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,032,815
Number of Sequences: 37544
Number of extensions: 286975
Number of successful extensions: 714
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)