Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120457.Seq
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)                    31   1.1  
SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)                30   1.5  
SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   4.5  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   5.9  
SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   7.8  

>SB_39408| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2389

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +3

Query: 453 IFQ*IVSSVRKRVVYAHAKTEPSIFIIYLIFCETLQLDLNHSRQRTSVAWQLNARLAISS 632
           IF   V +VR+  +  H K  P   + +     T ++  N     TSV WQ+  ++ ++S
Sbjct: 3   IFGAKVLAVREGTLDLHGKHVP---VTWTRLASTAEIGANQIHLHTSVTWQVGDKIILAS 59

Query: 633 SDDNQPKRE 659
           +  +Q + E
Sbjct: 60  TSRSQKENE 68


>SB_36923| Best HMM Match : FlaC_arch (HMM E-Value=0.34)
          Length = 240

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +1

Query: 466 SSVVYANALSTHMLKQSRPYLLYILYSVKHFN*T*TTADSARR*HGN*TQDWRF 627
           SSV Y NA  T  LKQ+R Y   +  +VK  N T    D      GN   D  F
Sbjct: 162 SSVEYLNASCTSQLKQTRYYDNAVYSAVKEMNETFNKKDKGNVKMGNELSDISF 215


>SB_5423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 149 VTVKMSTFGSFWFSDTFIWP---SLVFVSALMTCTVDKYV 259
           V V    FG+FW   T  W    SL  V  L T ++D+Y+
Sbjct: 100 VVVNHWPFGNFWCQTTGFWNLVLSLAAVLTLATISIDRYI 139


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -3

Query: 407 YTVLKRLSNGFIDKSVDVGSISELQKFNFKINRLTSYISNIFEYEFVVLE 258
           YT+ K LS+G+I+   +V   S L  +N  I     +  N++      LE
Sbjct: 36  YTIPKELSDGYINNKREVYKFSVLSGYNGTIFAYGQHPDNVYTVHISYLE 85


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 222 TKTKLGHINVSLNQNDPNVLILTVTL 145
           TKT L  +     +NDPNVL +TV L
Sbjct: 760 TKTALSTVQCCSLENDPNVLAITVIL 785


>SB_34401| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 2629

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 413 QNYTVLKRLSNG---FIDKSVDVGSISELQKFNFKINRLTSYISNIFEY 276
           QN +V+KRL +G    +DK++ +G      +    +  L  +++ IFEY
Sbjct: 178 QNLSVIKRLGSGNFGHVDKAMAIGIPGFPGQVTVAVKTLKDHLAIIFEY 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,412,634
Number of Sequences: 59808
Number of extensions: 367206
Number of successful extensions: 936
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)