Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120457.Seq
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    23   3.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   4.5  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      22   4.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.0  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   7.9  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.9  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 637 SLLEIANLAFSCHATDVRCLLWFKS 563
           S+ E  NLA S   T+ +  +WF++
Sbjct: 34  SVCERLNLALSLSLTETQVKIWFQN 58


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 401 VLKRLSNGFIDKSVDVGSISELQKFN 324
           ++  L  G I + +  GSISE QKF+
Sbjct: 413 IVSGLITGLIMRVLICGSISEEQKFD 438


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 5  CLQWDNFQTS 34
          CL+W+N+Q+S
Sbjct: 8  CLRWNNYQSS 17


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 5  CLQWDNFQTS 34
          CL+W+N+Q+S
Sbjct: 8  CLRWNNYQSS 17


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 304 VSRFILKLNFCNSLIEP 354
           +S   L L +CNSL+ P
Sbjct: 408 LSSLFLWLGYCNSLLNP 424


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -1

Query: 637 SLLEIANLAFSCHATDVRCLLWFKS 563
           ++ E A  + S H T+ +  +WF++
Sbjct: 35  TIAERAEFSSSLHLTETQVKIWFQN 59


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 257 HIYPQCTSLTPRQ 219
           + YP C +LTP Q
Sbjct: 216 YAYPYCYNLTPNQ 228


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 266 VLEHIYPQCTSLTPRQKLNWAI 201
           +L  ++ + T +TPR  L W +
Sbjct: 116 LLAQLFLKSTEVTPRDGLGWLL 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,803
Number of Sequences: 438
Number of extensions: 3458
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)