Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120456.Seq
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 31 0.18
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 30 0.41
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 29 0.72
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 3.9
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 27 3.9
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 27 3.9
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 5.1
SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9 |Schiz... 26 5.1
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 6.7
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 8.9
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 25 8.9
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 31.1 bits (67), Expect = 0.18
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -1
Query: 469 PLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMS 290
P+ + L L+S A R T L + A G + + PR++L V EP+ + S
Sbjct: 384 PMQKLQQQLQRLVSS-AKERPKATQLSLEGALGKIAVNTVRTPRQLLNVKRPTEPASSNS 442
Query: 289 SID--SGFS 269
S++ SGFS
Sbjct: 443 SLNNFSGFS 451
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 29.9 bits (64), Expect = 0.41
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 635 ELPRFSCTPECSW-ICAIRAPLVRTAAPCWGRSSTQSCCRLR 513
++ RFS SW + +AP V + + C S ++SCC LR
Sbjct: 1769 DIDRFSLKMLESWGLFENKAPFVNSTSICTAVSESRSCCHLR 1810
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 29.1 bits (62), Expect = 0.72
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 428 KVCG--AARHGHITRCAGRVWRFNSIVVYGAQKNAVSAHF 315
K+CG A HGH R R+W F + Y +K ++ F
Sbjct: 39 KICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEVF 78
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 288 DDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTR 413
D I + G NK S+ + T+ + SPN+ +T+SN T+
Sbjct: 891 DSIKRLGDNKFEDKSLRICTIPNSIFDSPNSHTTNSNSFFTK 932
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 367 LTP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYICSIYYRRVRCA 224
LTP +P+ ++L+P L+ L S+I SG I R VR A
Sbjct: 673 LTPGQLVLPKNLVLLPILILAVLKSSAIRSGSIHSDIRVSQLREVRAA 720
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 578 PLVRTAAPCWGRSSTQSCCRLRIEHAIVLYSFSGRYTF 465
PL T + WG S C ++++ L+SF G+ F
Sbjct: 399 PLNETCSEWWGELLA-STCNTKLDNLSCLHSFDGKQNF 435
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 617 TKNEAAQQVLLENNFTAINADQTAYLKNYKSYREMNLIN 733
T N+ + L NF D+ YLKN S R +L+N
Sbjct: 661 TNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMN 699
>SPAC227.11c |||sensor for misfolded ER glycoproteins Yos9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 291 DIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANFDIKEFK 446
D +KE + K +S+F ++Y PNA+ N T ++D++E +
Sbjct: 64 DSIKEKTEKTKLSSLFYAGKHEYFCVYPNASLIKQNSTT---EPSYDLQELR 112
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = -3
Query: 257 LLNLLSPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKLGDASVKEFKFN 105
LLN++ +KLA +L +T R SS L C + D FK++
Sbjct: 904 LLNVIGRKIWKKLAE--ILGYTSRRFLSSAEVKWLFCLGMRDGLKPSFKYH 952
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 635 ELPRFSCTPECSWICAIR 582
ELPRF P+C ++C ++
Sbjct: 212 ELPRFPDDPKCRYLCELQ 229
>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 415 PRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTL 314
P V++ V AF +TP YTVP+ +++PTL
Sbjct: 384 PPVLMVPYRVKKAF-PITP-DYTVPKDAMVIPTL 415
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,154,911
Number of Sequences: 5004
Number of extensions: 66278
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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