Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120456.Seq
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0248 - 1841454-1841820,1842223-1842728                           31   0.76 
01_03_0018 - 11686420-11687460                                         30   2.3  
09_02_0060 + 3729613-3729863,3730377-3730392                           28   7.1  
07_01_0307 - 2194796-2199274                                           28   7.1  
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774...    28   7.1  
02_04_0609 + 24312528-24313352                                         28   9.3  

>12_01_0248 - 1841454-1841820,1842223-1842728
          Length = 290

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 24/96 (25%), Positives = 39/96 (40%)
 Frame = -1

Query: 517 FESNMPLSSTVLVGVIPLNTINMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP*SYTVPR 338
           F    P S T  +  +  + ++   N L +    P  +V  L+      D  P   ++P 
Sbjct: 78  FMVTFPKSGTTWLKTLLHSALHRGANDLAAHS--PHQLVPFLETQVFIKDRIPDLSSLPA 135

Query: 337 KMLLVPTLLEPSLTMSSIDSGFSAIYICSIYYRRVR 230
             LL+  +   SL  S  DSG   +Y+C    R+ R
Sbjct: 136 PRLLMTHIPSQSLPDSVADSGCKVVYLCRDPNRKFR 171


>01_03_0018 - 11686420-11687460
          Length = 346

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 415 PRVMVTLLDVLAAFGDLTP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIC 254
           P  +V  L++     D  P   ++P   LL   +  PSL  S   SG   +Y+C
Sbjct: 119 PHQLVPFLEIQVYVRDRAPDLSSLPAPRLLATHIPRPSLPASVAISGCKVVYMC 172


>09_02_0060 + 3729613-3729863,3730377-3730392
          Length = 88

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 226 ANWPPGRY*ALRLIVCSRLIPPIRC 152
           A WPP RY + R   C R +P + C
Sbjct: 35  AKWPPSRYRSYR-ATCCRAVPSLLC 58


>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 575 EVRELRKSNCTLVYTKNEAAQQVLL 649
           E+RELR  N   V+TK EAA+  LL
Sbjct: 798 ELRELRIDNLEKVHTKEEAAEAKLL 822


>02_05_0642 +
           30576158-30576289,30576436-30576503,30577167-30577487,
           30578318-30579146
          Length = 449

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -1

Query: 181 CSRLIPPIRC-SALNWATPRLR 119
           CS  +PP+RC   L W+ PR++
Sbjct: 23  CSSRLPPLRCFVGLRWSAPRIQ 44


>02_04_0609 + 24312528-24313352
          Length = 274

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
 Frame = -1

Query: 511 SNMPLSSTVLVGVIPLNT--------INMDLNSLISKFAVPRVMVTLLDVLAAFGDLTP* 356
           S + LS+ +LVG IP N         +++D N+L          +T L++L  F +    
Sbjct: 150 SYLDLSTNLLVGAIPANISLLSNLEYLDLDQNNLTGTVLQTIGDITSLEILYLFQNQL-- 207

Query: 355 SYTVPRKMLLVPTLLEPSLTMSSIDSG 275
           S ++P K+  +P L++  L  +++  G
Sbjct: 208 SGSIPDKIWQLPNLMQLVLGENNLSGG 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,746,877
Number of Sequences: 37544
Number of extensions: 417751
Number of successful extensions: 1075
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1075
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)