Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120456.Seq
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    30   2.1  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   4.8  
Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical pr...    28   6.3  

>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 302 FDYVVYR*RFFGNIHLLNLLSPCAMRKL 219
           F+YV Y  R+FG  HLL+L   CA + L
Sbjct: 750 FEYVDYVTRYFGISHLLSLYEECATQIL 777


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 109 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRI 231
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL 58


>Z19154-8|CAE17741.1|  335|Caenorhabditis elegans Hypothetical
           protein C40H1.9 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 579 CANCANPTALWCTRKTRQLSKFY---WKITLPLLMLTKPPI 692
           C+NC     +WC  +++  S F     KI+L L   TKP +
Sbjct: 25  CSNCVGSGQVWCVEQSQCNSSFVSCSTKISLQLNCPTKPKV 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,362,230
Number of Sequences: 27780
Number of extensions: 372943
Number of successful extensions: 1148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)